Projects update meeting 2022-05-25

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  • Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
  • Present:
  • Regrets: David


We will have our 'priorities' discussion next week, hopefully everyone can be present.


New groups (and groups in general): it would be nice to have guidelines as to what is a group, when to create a new group Decision from last week: We will add a parent field to groups and ensure every group other than GOC has a parent

Review and finalize + present at the next annotation call?

Discussion Paul suggests to have a Memorandum of Understanding (MOU) to define what we expect from collaborating groups and what our procedures are when handling data from collaborating groups. AI: Pascale: create first draft

GitHub Projects

Update status for projects: Are they Active, Planning, On Hold, or Closed?

Projects nearing completion

New projects

Review specs and scope

Task Matrix

Main tasks - Jan-July 2022

Currently active projects

Project name Link to GH project Resources: PI, PO, TL, Other resources Next review Follow up review Aligned with Matrix? Notes
Software improvement
Software improvements : GO API GO API PI: Chris, PO:??, TL: Seth, Others: Sierra Yes Project continues in May - schedule next review + estimate date of completion
Software improvements : pipeline cleanup PLANNING Pipeline cleanup PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? Status still Planning
Alliance software support Alliance software support PI: , PO:??, TL: Seth, Others:
Noctua improvement and maintenance Noctua 2021 PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim
GO_REFs GO_REFs PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra Was supposed to end in April; make new estimate of time needed
Ongoing data QC and pipeline maintenance Ongoing data QC and pipeline maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Ad hoc if there is a big bug Yes
Essential software maintenance Essential software maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Ad hoc if there is a big bug Yes
Remove some main roadblocks for GO-CAM models curation (Aim 2)
NEO load of new sequences NEO load GH project PI: Chris, PO: Pascale , TL:, Seth Others: Sujay
Noctua Visual editor (Tremayne) - V1.0 done Visual Pathway editor GH project PI: Paul, PO: Paul, TL:, Others: Tremayne Yes Need to complete documentation (Pascale + Kimberly, David, Paul, Patrick proof read)
Model copy PLANNED Old Shallow Model Copy GH project PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne Yes ? Is this Jim's next priority?
Simple version of automation of Noctua updates Noctua updates PI: Chris, PO: TBD, TL: Seth, Others:
Complete MOD imports (Aim 2)
MOD imports MGI - WB - SGD PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin
Integrate YeastPathways in GO Cam Yeast Pathways PI: Paul, PO: , TL: Dustin, Others:
Ontology (Aim 1)
PI: , PO: , TL: , Others:
Outreach/usability (Aim 3)
PI: , PO: , TL: , Others:
Projects to prioritize
Switch to “species” for download outputs PLANNED Improved Downloads ???? PI: , PO:, TL:, Others:
Noctua output PLANNING GPAD outputs- Complex Models and Redundancy Filtering PI: Chris, PO: Kimberly, TL:?, Others: Jim
Next Noctua tasks
Annotation Extension Relation Review Annotation Extension Relation Review PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale
ECO-GO Alignment ECO-GO Alignment
GO rules, including missing valid rules from the report
Phylogenetic taxon constraints TC GH project - ontology repo PI: Paul, PO: Pascale, TL: Jim, Others:
Noctua training material Noctua training Project PI: Mike , PO: Suzi, TL: NA, Others: David Develop new training materials based on MGI and ZFIN training
Other projects