| Project name
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Link to GH project
|
Resources: PI, PO, TL, Other resources
|
Next review
|
Follow up review
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Aligned with Matrix?
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Notes
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| Software improvement
|
| Software improvements : GO API
|
GO API
|
PI: Chris, PO:??, TL: Seth, Others: Sierra
|
|
|
Yes
|
Project continues in May - schedule next review + estimate date of completion
|
| Software improvements : pipeline cleanup
|
PLANNING Pipeline cleanup
|
PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay?
|
|
|
|
Status still Planning
|
| Alliance software support
|
Alliance software support
|
PI: , PO:??, TL: Seth, Others:
|
|
|
|
|
| Noctua improvement and maintenance
|
Noctua 2021
|
PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim
|
|
|
|
|
| GO_REFs
|
GO_REFs
|
PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra
|
|
|
|
Was supposed to end in April; make new estimate of time needed
|
| Ongoing data QC and pipeline maintenance
|
Ongoing data QC and pipeline maintenance
|
PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim?
|
Ad hoc if there is a big bug
|
|
Yes
|
|
| Essential software maintenance
|
Essential software maintenance
|
PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim?
|
Ad hoc if there is a big bug
|
|
Yes
|
|
| Remove some main roadblocks for GO-CAM models curation (Aim 2)
|
| NEO load of new sequences
|
NEO load GH project
|
PI: Chris, PO: Pascale , TL:, Seth Others: Sujay
|
|
|
|
|
| Noctua Visual editor (Tremayne) - V1.0 done
|
Visual Pathway editor GH project
|
PI: Paul, PO: Paul, TL:, Others: Tremayne
|
|
|
Yes
|
Need to complete documentation (Pascale + Kimberly, David, Paul, Patrick proof read)
|
| Model copy
|
PLANNED Old Shallow Model Copy GH project
|
PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne
|
|
|
Yes ?
|
Is this Jim's next priority?
|
| Simple version of automation of Noctua updates
|
Noctua updates
|
PI: Chris, PO: TBD, TL: Seth, Others:
|
|
|
|
|
| Complete MOD imports (Aim 2)
|
| MOD imports
|
MGI - WB - SGD
|
PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin
|
|
|
|
|
| Integrate YeastPathways in GO Cam
|
Yeast Pathways
|
PI: Paul, PO: , TL: Dustin, Others:
|
|
|
|
|
| Ontology (Aim 1)
|
|
|
|
PI: , PO: , TL: , Others:
|
|
|
|
|
| Outreach/usability (Aim 3)
|
|
|
|
PI: , PO: , TL: , Others:
|
|
|
|
|
| Projects to prioritize
|
| Switch to “species” for download outputs
|
PLANNED Improved Downloads ????
|
PI: , PO:, TL:, Others:
|
|
|
|
|
| Noctua output
|
PLANNING GPAD outputs- Complex Models and Redundancy Filtering
|
PI: Chris, PO: Kimberly, TL:?, Others: Jim
|
|
|
|
|
| Next Noctua tasks
|
|
|
|
|
|
| Annotation Extension Relation Review
|
Annotation Extension Relation Review
|
PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale
|
|
|
|
|
| ECO-GO Alignment
|
ECO-GO Alignment
|
|
|
|
|
|
| GO rules, including missing valid rules from the report
|
|
|
|
|
|
| Phylogenetic taxon constraints
|
TC GH project - ontology repo
|
PI: Paul, PO: Pascale, TL: Jim, Others:
|
|
|
|
|
| Noctua training material
|
Noctua training Project
|
PI: Mike , PO: Suzi, TL: NA, Others: David
|
|
|
|
Develop new training materials based on MGI and ZFIN training
|
| Other projects
|