Projects update meeting 2022-06-29: Difference between revisions

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* Members:  David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
* Members:  David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
* Present:  
* Present: Huaiyu, Kimberly, Pascale, Seth, Suzi, Cynthia
* Regrets: David
* Regrets: David, Paul, Chris


==GOC meeting==  
==GOC meeting==  
Only 12 people would attend in person, out of 30 responses:  
Only 15 people would attend in person, out of 30 responses:  
https://docs.google.com/forms/d/14pCJd-tiYtVB0prij_EXc1F80Vqfvnuc0sBe_Gdolf4/edit#responses
https://docs.google.com/forms/d/14pCJd-tiYtVB0prij_EXc1F80Vqfvnuc0sBe_Gdolf4/edit#responses


== Ongoing work updates ==
== Ongoing work updates ==


===Google drive move===
https://github.com/orgs/geneontology/projects/90
* Status: will check and report next week


=== Adding SO terms as valid range for 'occurs in' annotation extension ===
=== Adding SO terms as valid range for 'occurs in' annotation extension ===
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=== [https://github.com/orgs/geneontology/projects/37 SynGO Updates] ===
=== [https://github.com/orgs/geneontology/projects/37 SynGO Updates] ===
* Actions
* Actions
** PO: Paul T
*Pascale to check annotations
** TL: Dustin
* If looks OK, request feedback from Frank
** Ask Frank at SynGO to check
** Do we have some SOP? sanity checks?
*** David to provide list of MGI checks
# Dustin will generate stats on the json to ttl conversion
# Ask Frank at SynGO to check models on dev, proposed date to get feedback by: June 23rd
# Make a syngo-specific pipeline to give them a report
# We will put the models on prod no matter what in 2 weeks (whether or not we are able to do this work)
# Produce a MOU (see below)


===[https://github.com/orgs/geneontology/projects/80 Model copy]===
===[https://github.com/orgs/geneontology/projects/80 Model copy]===
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* Tomorrow morning - Kimberly will systematically test
* Tomorrow morning - Kimberly will systematically test
** This is a large PR with changes to multiple workbenches besides model copy; will require some pretty thorough testing
** This is a large PR with changes to multiple workbenches besides model copy; will require some pretty thorough testing
* Workbenches at 10am PDT Thursday - aiming to make a call on moving to production by then
* Workbenches at 10am PDT Thursday - aiming to make a call on moving to production by then - Tuesday, July 5th target date?
 
==Loading widgets into AmiGO==
* [https://github.com/geneontology/amigo/issues/650 Preliminary work indicates that this is not too much work] 
What's next? How high of a priority is this?
* Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)
 
==Distinction_between_'has_input'_and_'with/from'==
https://wiki.geneontology.org/Annotation_Extension_Relation:has_input#Distinction_between_'has_input'_and_'with/from'


===MOU draft===
===MOU draft===

Latest revision as of 11:43, 29 June 2022

Attendees

  • Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
  • Present: Huaiyu, Kimberly, Pascale, Seth, Suzi, Cynthia
  • Regrets: David, Paul, Chris

GOC meeting

Only 15 people would attend in person, out of 30 responses: https://docs.google.com/forms/d/14pCJd-tiYtVB0prij_EXc1F80Vqfvnuc0sBe_Gdolf4/edit#responses

Ongoing work updates

Google drive move

https://github.com/orgs/geneontology/projects/90

  • Status: will check and report next week

Adding SO terms as valid range for 'occurs in' annotation extension

  • Curators would like to be able to specify chromosomal regions where MFs occur
  • Right now, SO terms are not a valid range for 'occurs in'
  • Any reason(s) not to add SO terms as a valid range?
    • A few years ago, there was discussion of MSO vs SO that might have had some bearing on this, but that discussion seems to have tailed off.

SynGO Updates

  • Actions
  • Pascale to check annotations
  • If looks OK, request feedback from Frank

Model copy

  • Status
  • Tremayne submitted PR; Seth updated noctua-dev
  • Tomorrow morning - Kimberly will systematically test
    • This is a large PR with changes to multiple workbenches besides model copy; will require some pretty thorough testing
  • Workbenches at 10am PDT Thursday - aiming to make a call on moving to production by then - Tuesday, July 5th target date?

Loading widgets into AmiGO

What's next? How high of a priority is this?

  • Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)

Distinction_between_'has_input'_and_'with/from'

https://wiki.geneontology.org/Annotation_Extension_Relation:has_input#Distinction_between_'has_input'_and_'with/from'

MOU draft

Can this be automated from the yaml?

  • CHRIS: YES!!!!

Potential priorities short list

https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#heading=h.nntgv5th4cph

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