Projects update meeting 2022-06-29

Attendees

• Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
• Present:
• Regrets: David

GOC meeting

Only 12 people would attend in person, out of 30 responses: https://docs.google.com/forms/d/14pCJd-tiYtVB0prij_EXc1F80Vqfvnuc0sBe_Gdolf4/edit#responses

Ongoing work updates

Adding SO terms as valid range for 'occurs in' annotation extension

• Curators would like to be able to specify chromosomal regions where MFs occur
• Right now, SO terms are not a valid range for 'occurs in'
• Any reason(s) not to add SO terms as a valid range?
  • A few years ago, there was discussion of MSO vs SO that might have had some bearing on this, but that discussion seems to have tailed off.

SynGO Updates

• Actions
• Pascale to check annotations
• If looks OK, request feedback from Frank

Model copy

• Status
• Tremayne submitted PR; Seth updated noctua-dev
• Tomorrow morning - Kimberly will systematically test
  • This is a large PR with changes to multiple workbenches besides model copy; will require some pretty thorough testing
• Workbenches at 10am PDT Thursday - aiming to make a call on moving to production by then - Tuesday, July 5th target date?

Loading widgets into AmiGO

Preliminary work indicates that this is not too much work  What's next? How high of a priority is this?

Distinction_between_'has_input'_and_'with/from'

https://wiki.geneontology.org/Annotation_Extension_Relation:has_input#Distinction_between_'has_input'_and_'with/from'

MOU draft

• https://docs.google.com/document/d/1T1yW4dPaztjTJIkDPLBi3ob_-IGiqkP-kvGscprYijY/edit#
• update contributors list: http://geneontology.org/docs/go-consortium/
• unify with: http://geneontology.org/docs/annotation-contributors/
• http://geneontology.org/docs/collaborations/

Can this be automated from the yaml?

• CHRIS: YES!!!!

Potential priorities short list

https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#heading=h.nntgv5th4cph