Projects update meeting 2022-07-06: Difference between revisions

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* [https://github.com/geneontology/amigo/issues/650 Preliminary work indicates that this is not too much work]  
* [https://github.com/geneontology/amigo/issues/650 Preliminary work indicates that this is not too much work]  
** Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6
** Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6
** no blockers for dropping in ribbon
*** do we want to use the AGR slim?
What's next? How high of a priority is this?
What's next? How high of a priority is this?
* Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)
* Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)

Revision as of 20:54, 5 July 2022

Attendees

  • Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
  • Present:
  • Regrets:

GOC meeting

Documentation

Process for review and approval of documentation

Can someone provide more context on this? Cjm (talk) 20:42, 5 July 2022 (EDT)

  • Who?
    • managers? form a 'documentation committee'?
  • How?
    • set up calls? via email/google docs + comments?

Distinction_between_'has_input'_and_'with/from'

https://wiki.geneontology.org/Annotation_Extension_Relation:has_input#Distinction_between_'has_input'_and_'with/from'

Ongoing work updates

Google drive move

https://github.com/orgs/geneontology/projects/90

  • Suzy to report on status

Model copy

  • Status

Adding SO terms as valid range for 'occurs in' annotation extension

  • Curators would like to be able to specify chromosomal regions where MFs occur
  • Right now, SO terms are not a valid range for 'occurs in'
  • Any reason(s) not to add SO terms as a valid range?
    • A few years ago, there was discussion of MSO vs SO that might have had some bearing on this, but that discussion seems to have tailed off.

SynGO Updates

Loading widgets into AmiGO

What's next? How high of a priority is this?

  • Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)

MOU draft

Can this be automated from the yaml?

  • CHRIS: YES!!!!

Potential priorities short list

https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#heading=h.nntgv5th4cph