Projects update meeting 2022-07-20

Attendees

• Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
• Present:
• Regrets:

Announcements

GOC meeting

Oct 11-13 at CalTech; a mix of in-person and remote

No GO calls the first 2 weeks of August

• Many people are off the first week; the second week is the no GO calls week
• Who is away next week?

David, Chris, others?

Ongoing work updates

Active Projects

Projects soon ready to be closed

Google drive move

https://github.com/orgs/geneontology/projects/90

• Suzy to report on status & check on other people
• Chris to move his files
• Do we need to add any documentation (since we said documentation should be part of all projects) - would be worth it to write how we organize files, etc

Model copy

• Status
• Documentation?

SynGO Updates

Is the next task documentation?

Loading MGI non-mouse annoations into Protein2GO

Status

Ontology updates in Minerva / Noctua

Status

====Visual Pathway Editor

• Last tickets need testing/closing
• Documentation needs to be completed

====Yeast Pathways

• Dustin

Ongoing projects

Alliance software support

Is this active?

Relations to link MFs

• Kimberly (PO), David, Pascale, Paul T (PI)
• Aim to clarify use of relations to link MFs. This work may also entail creating new relations in RO. The deliverables are: a set of relations to links MFs, exemplar models and explanations, documentation, and a strategy for harmonizing existing relations with new guidelines.

[GO-CAM Enrichment]

Explore GO-CAM enrichment with PaulS's summer student Nick. PI: Chris (PaulS) PO: Kimberly TL: Dustin Other: Kimberly, Jim, Dustin

====GO API refactor Sierra

To prioritize

Loading widgets into AmiGO

• Preliminary work indicates that this is not too much work
  • Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6
  • no blockers for dropping in ribbon
    • do we want to use the AGR slim?

What's next? How high of a priority is this?

• Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)

MOU draft

• https://docs.google.com/document/d/1T1yW4dPaztjTJIkDPLBi3ob_-IGiqkP-kvGscprYijY/edit#
• update contributors list: http://geneontology.org/docs/go-consortium/
• unify with: http://geneontology.org/docs/annotation-contributors/
• http://geneontology.org/docs/collaborations/

Can this be automated from the yaml?

• CHRIS: YES!!!!

Potential priorities short list

https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#heading=h.nntgv5th4cph

To schedule for a future call

• Paper planning: Chris and Nomi

• Review API refactor project - Sierra
• Review [1] Yeast Pathways project - Dustin