Projects update meeting 2022-07-20: Difference between revisions
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* Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia | ||
* Present: | * Present: | ||
* Regrets: | * Regrets: Huaiyu | ||
=Announcements= | |||
==GOC meeting== | ==GOC meeting== | ||
Oct 11-13 at CalTech; a mix of in-person and remote | Oct 11-13 at CalTech; a mix of in-person and remote | ||
==No GO calls the first 2 weeks of August== | |||
* Many people are off the first week; the second week is the no GO calls week | |||
* Who is away next week? | |||
David, Chris, Kimberly (from Wed. onward) others? | |||
== Ongoing work updates == | == Ongoing work updates == | ||
[https://github.com/orgs/geneontology/projects?type=classic | [https://github.com/orgs/geneontology/projects?type=classic Active Projects] | ||
===Google drive move=== | ==GCBR application due August 8.== | ||
(Paul) Mostly we need to generate specific usage statistics. | |||
Paul will make a Google doc by tomorrow so Seth can provide the required stats | |||
===Projects soon ready to be closed=== | |||
====Google drive move==== | |||
https://github.com/orgs/geneontology/projects/90 | https://github.com/orgs/geneontology/projects/90 | ||
* Suzy to report on status & check on other people | * Suzy to report on status & check on other people | ||
* Chris to move his files | * Chris to move his files | ||
* Do we need to add any documentation (since we said documentation should be part of all projects) - would be worth it to write how we organize files, etc | |||
* Plan to end by the end of July | |||
===[https://github.com/orgs/geneontology/projects/80 Model copy]=== | ====[https://github.com/orgs/geneontology/projects/80 Model copy]==== | ||
* Status | * Status | ||
** | * Documentation? | ||
** Kimberly | ** Curator-facing documentation still needs to be added - David will do that | ||
==== [https://github.com/geneontology/syngo-go-cams/issues/3 SynGO Updates] ==== | |||
* Is the next task documentation? | |||
* Seth: we need a new project to determine load/testing in the future | |||
====[https://github.com/orgs/geneontology/projects/93 Loading MGI non-mouse annoations into Protein2GO] ==== | |||
Status | |||
====[https://github.com/orgs/geneontology/projects/65 Noctua enhancements and bug fixes]==== | |||
====[https://github.com/orgs/geneontology/projects/87 Ontology updates in Minerva / Noctua] ==== | |||
Status | |||
* All tickets done | |||
* Need to add curator-facing documentation | |||
* Documentation has been added to the [https://docs.google.com/document/d/1XQf3xnWb8mcvVXgIpvTiHuzMzslc1xoffaRifGqTgAQ Noctua outage SOP] | |||
====[https://github.com/orgs/geneontology/projects/84 Visual Pathway Editor]==== | |||
* Last tickets need testing/closing | |||
* Documentation needs to be completed | |||
====[https://github.com/orgs/geneontology/projects/77 Yeast Pathways]==== | |||
* Dustin | |||
===Ongoing projects=== | |||
====[https://github.com/orgs/geneontology/projects/76 Alliance software support]==== | |||
Is this active? | |||
====[https://github.com/orgs/geneontology/projects/100 Relations to link MFs]==== | |||
* Kimberly (PO), David, Pascale, Paul T (PI) | |||
* Aim to clarify use of relations to link MFs. This work may also entail creating new relations in RO. The deliverables are: a set of relations to links MFs, exemplar models and explanations, documentation, and a strategy for harmonizing existing relations with new guidelines. | |||
====[GO-CAM Enrichment]==== | |||
Explore GO-CAM enrichment with PaulS's summer student Nick. PI: Chris (PaulS) PO: Kimberly TL: Dustin Other: Kimberly, Jim, Dustin | |||
=== [https://github.com/geneontology/ | ====[https://github.com/orgs/geneontology/projects/85 GO API refactor]==== | ||
Sierra | |||
===Loading widgets into AmiGO=== | ====[https://github.com/orgs/geneontology/projects/69 Software essential and proactive maintenance]==== | ||
====[https://github.com/orgs/geneontology/projects/62 Ongoing data QC and pipeline maintenance ]==== | |||
===To prioritize=== | |||
====Loading widgets into AmiGO==== | |||
* [https://github.com/geneontology/amigo/issues/650 Preliminary work indicates that this is not too much work] | * [https://github.com/geneontology/amigo/issues/650 Preliminary work indicates that this is not too much work] | ||
** Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6 | ** Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6 | ||
Line 31: | Line 82: | ||
What's next? How high of a priority is this? | What's next? How high of a priority is this? | ||
* Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL) | * Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL) | ||
====Potential priorities short list==== | |||
https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#heading=h.wjj6xn7cait3 | |||
==MOU draft== | ==MOU draft== | ||
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* CHRIS: YES!!!! | * CHRIS: YES!!!! | ||
* '''NEXT''' | |||
** Make a lits of the various contributing groups and their status | |||
** Make a Google form so people can 'sign' | |||
** Set up some reminder system so we check every year or so whether groups are stil active (especially those that don't attend the meetings) | |||
=To schedule for a future call= | =To schedule for a future call= |
Latest revision as of 12:03, 20 July 2022
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present:
- Regrets: Huaiyu
Announcements
GOC meeting
Oct 11-13 at CalTech; a mix of in-person and remote
No GO calls the first 2 weeks of August
- Many people are off the first week; the second week is the no GO calls week
- Who is away next week?
David, Chris, Kimberly (from Wed. onward) others?
Ongoing work updates
GCBR application due August 8.
(Paul) Mostly we need to generate specific usage statistics. Paul will make a Google doc by tomorrow so Seth can provide the required stats
Projects soon ready to be closed
Google drive move
https://github.com/orgs/geneontology/projects/90
- Suzy to report on status & check on other people
- Chris to move his files
- Do we need to add any documentation (since we said documentation should be part of all projects) - would be worth it to write how we organize files, etc
- Plan to end by the end of July
Model copy
- Status
- Documentation?
- Curator-facing documentation still needs to be added - David will do that
SynGO Updates
- Is the next task documentation?
- Seth: we need a new project to determine load/testing in the future
Loading MGI non-mouse annoations into Protein2GO
Status
Noctua enhancements and bug fixes
Ontology updates in Minerva / Noctua
Status
- All tickets done
- Need to add curator-facing documentation
- Documentation has been added to the Noctua outage SOP
Visual Pathway Editor
- Last tickets need testing/closing
- Documentation needs to be completed
Yeast Pathways
- Dustin
Ongoing projects
Alliance software support
Is this active?
Relations to link MFs
- Kimberly (PO), David, Pascale, Paul T (PI)
- Aim to clarify use of relations to link MFs. This work may also entail creating new relations in RO. The deliverables are: a set of relations to links MFs, exemplar models and explanations, documentation, and a strategy for harmonizing existing relations with new guidelines.
[GO-CAM Enrichment]
Explore GO-CAM enrichment with PaulS's summer student Nick. PI: Chris (PaulS) PO: Kimberly TL: Dustin Other: Kimberly, Jim, Dustin
GO API refactor
Sierra
Software essential and proactive maintenance
Ongoing data QC and pipeline maintenance
To prioritize
Loading widgets into AmiGO
- Preliminary work indicates that this is not too much work
- Before we drop the pathway widget in AmiGO, we should first fix: https://github.com/geneontology/api-gorest-2021/issues/6
- no blockers for dropping in ribbon
- do we want to use the AGR slim?
What's next? How high of a priority is this?
- Need to decide exactly what we want - needs have a proper project and propose some specs and deliverables (and PI, PO, TL)
Potential priorities short list
MOU draft
- https://docs.google.com/document/d/1T1yW4dPaztjTJIkDPLBi3ob_-IGiqkP-kvGscprYijY/edit#
- update contributors list: http://geneontology.org/docs/go-consortium/
- unify with: http://geneontology.org/docs/annotation-contributors/
- http://geneontology.org/docs/collaborations/
Can this be automated from the yaml?
- CHRIS: YES!!!!
- NEXT
- Make a lits of the various contributing groups and their status
- Make a Google form so people can 'sign'
- Set up some reminder system so we check every year or so whether groups are stil active (especially those that don't attend the meetings)
To schedule for a future call
- Paper planning: Chris and Nomi
- Review API refactor project - Sierra
- Review [1] Yeast Pathways project - Dustin