Projects update meeting 2022-09-21: Difference between revisions
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| DONE - Documentation remains to be finalized | | DONE - Documentation remains to be finalized | ||
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| Relations to link MFs | |||
| [https://github.com/orgs/geneontology/projects/100 ACTIVE: relations to link MFs] | |||
| '''PI: ''' Paul, '''PO:''' Kimberly, '''TL:''' '''Others:''' David, Pascale, Chris, Jim | |||
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| Presented to ontology group on Monday, 9/19 - will move forward with RO editorial work and curator documentation | |||
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! colspan="7" | Complete MOD imports (Aim 2) | ! colspan="7" | Complete MOD imports (Aim 2) |
Revision as of 09:27, 21 September 2022
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris (few mins late), Cynthia
- Present:
- Regrets:
GOC meeting
- currently 58 registered - announced that the meeting will be remote
- Survey - gathering information about why people chose not to attend in person
- Agenda: https://docs.google.com/document/d/1YdM-RRosNJh1i4w4MLCF5lGfRrFIv7EqyNhEQD_QL0M/edit#
Guidelines for Noctua users
- Should they be members of specific groups?
- Do they need to attend some training?
- Do we need restricted write/edit access?
- ...
MOU
Projects update
Annotation Extension Relations in Noctua
- Need clarification on scope of project - Kimberly
- Project Specifications
Model Copy
- Sent link to documentation to Leyla, Suzi, Patrick, and Sylvain (currently on vacation)
- Made one revision based on feedback from Suzi
- Good to go?
- Check on plans for GOC meeting
SGD and WB Migration to Noctua
- We have confirmation from Alex that mid-October will work for him
- Move forward with this after the GOC meeting
Currently active projects
Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
---|---|---|---|---|---|---|
Software improvement | ||||||
Software improvements : GO API | GO API | PI: Chris, PO:??, TL: Seth, Others: Sierra | Ongoing - schedule next review + estimate date of completion | |||
Ongoing - GO releases QC | GO releases QC | PI:?? , PO: Pascale , TL: Seth , Others: | ||||
Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | ||||
Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
Noctua Visual editor (Tremayne) - V1.0 done | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | 1 open ticket | |||
Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | DONE - Documentation remains to be finalized | |||
Relations to link MFs | ACTIVE: relations to link MFs | PI: Paul, PO: Kimberly, TL: Others: David, Pascale, Chris, Jim | Presented to ontology group on Monday, 9/19 - will move forward with RO editorial work and curator documentation | |||
Complete MOD imports (Aim 2) | ||||||
WB and SGD MOD imports | WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | Scheduled for mid-october | |||
Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | ||||
Ontology (Aim 1) | ||||||
Improve ontology design patterns | GH project - ontology repo | PI: Chris, PO: Pascale, TL: Jim, Others: | Had a summer camp - Sept 6-9th; some improvements and cleaning done, much work remains | |||
Multiorganism processes | GH project - ontology repo | PI: ??, PO: Pascale, TL: Jim, Others: | Summer camp - Sept 19th-22nd; some improvements and cleaning done, much work remains | |||
Transcription, non-coding RNA, chromatin processes refactoring | Transcription refactor | Biweekly call - on hold for a few weeks (group members working on other projects) | ||||
Boomer - to align GO and RHEA | Boomer | 10 open tickets | ||||
Outreach/usability (Aim 3) | ||||||
PI: , PO: , TL: , Others: | ||||||
Projects to prioritize | ||||||
Software & pipeline issues & improvement | ||||||
Software improvements : pipeline cleanup | PLANNING Pipeline cleanup | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | ||||
Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | ||||
ECO-GO Alignment | ECO-GO Alignment | |||||
Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
Noctua output | PLANNING GPAD outputs- Complex Models and Redundancy Filtering | PI: Chris, PO: Kimberly, TL:?, Others: Jim | ||||
Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | Develop new training materials based on MGI and ZFIN training? | |||
Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | Need clarification on scope of project | |||
Ontology (Aim 1) | ||||||
Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | ||||
Other projects |
Priorities
Today we discuss the next GO priorities based on this document: https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#