Projects update meeting 2022-09-21: Difference between revisions

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Revision as of 09:36, 21 September 2022

Attendees

  • Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris (few mins late), Cynthia
  • Present:
  • Regrets:

GOC meeting

Guidelines for Noctua users

  • Should they be members of specific groups?
  • Do they need to attend some training?
  • Do we need restricted write/edit access?
  • ...

MOU

Projects update

Annotation Extension Relations in Noctua

Model Copy

  • Sent link to documentation to Leyla, Suzi, Patrick, and Sylvain (currently on vacation)
  • Made one revision based on feedback from Suzi
  • Good to go?
  • Check on plans for GOC meeting

SGD and WB Migration to Noctua

  • We have confirmation from Alex that mid-October will work for him
  • Move forward with this after the GOC meeting


Currently active projects

Project name Link to GH project Resources: PI, PO, TL, Other resources Next review Follow up review Aligned with Matrix? Notes
Software improvement
Software improvements : GO API GO API PI: Chris, PO:??, TL: Seth, Others: Sierra Ongoing - schedule next review + estimate date of completion
Ongoing - GO releases QC GO releases QC PI:?? , PO: Pascale , TL: Seth , Others:        
Alliance software support Alliance software support PI: , PO:??, TL: Seth, Others:
Ongoing data QC and pipeline maintenance Ongoing data QC and pipeline maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Ad hoc if there is a big bug Yes
Essential software maintenance Essential software maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Ad hoc if there is a big bug Yes
Remove some main roadblocks for GO-CAM models curation (Aim 2)
Noctua Visual editor (Tremayne) - V1.0 done Visual Pathway editor GH project PI: Paul, PO: Paul, TL:, Others: Tremayne 1 open ticket
Model copy PLANNED Old Shallow Model Copy GH project PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne DONE
Relations to link MFs ACTIVE: relations to link MFs PI: Paul, PO: Kimberly, TL: Others: David, Pascale, Chris, Jim Presented to ontology group on Monday, 9/19 - will move forward with RO editorial work and curator documentation
Annotation Extension Relations in Noctua ACTIVE: Annotation Extension Relations in Noctua PI: Paul , PO: Kimberly, TL: Seth , Others: David, Jim Need clarification on scope of project
Complete MOD imports (Aim 2)
WB and SGD MOD imports WB - SGD PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin Scheduled for mid-october
Integrate YeastPathways in GO Cam Yeast Pathways PI: Paul, PO: , TL: Dustin, Others:
Ontology (Aim 1)
Improve ontology design patterns GH project - ontology repo PI: Chris, PO: Pascale, TL: Jim, Others: Had a summer camp - Sept 6-9th; some improvements and cleaning done, much work remains
Multiorganism processes GH project - ontology repo PI: ??, PO: Pascale, TL: Jim, Others: Summer camp - Sept 19th-22nd; some improvements and cleaning done, much work remains
Transcription, non-coding RNA, chromatin processes refactoring Transcription refactor  Biweekly call - on hold for a few weeks (group members working on other projects)
Boomer - to align GO and RHEA Boomer  10 open tickets
Outreach/usability (Aim 3)
PI: , PO: , TL: , Others:
Projects to prioritize
Software & pipeline issues & improvement
Software improvements : pipeline cleanup PLANNING Pipeline cleanup PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay?
Switch to “species” for download outputs PLANNED Improved Downloads ???? PI: , PO:, TL:, Others:
ECO-GO Alignment ECO-GO Alignment
Remove some main roadblocks for GO-CAM models curation (Aim 2)
Noctua output PLANNING GPAD outputs- Complex Models and Redundancy Filtering PI: Chris, PO: Kimberly, TL:?, Others: Jim
Noctua training material Noctua training Project PI: Mike , PO: Suzi, TL: NA, Others: David Develop new training materials based on MGI and ZFIN training?
Annotation Extension Relation Review Annotation Extension Relation Review PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale
Ontology (Aim 1)
Phylogenetic taxon constraints TC GH project - ontology repo PI: Paul, PO: Pascale, TL: Jim, Others:
Other projects

Priorities

Today we discuss the next GO priorities based on this document: https://docs.google.com/document/d/1TrxTZMRMAS0BCektM79nqvcZq8R3PXEMVWd_CbW-RfI/edit#