Projects update meeting 2023-11-29
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Attendees
- Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia
- Present: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Cynthia
- Regrets: Chris
Projects status
https://github.com/orgs/geneontology/projects/108/views/1
David's retirement
Li is taking David's role as contact person at MGI
MGI loads
David noticed that IEAs from GOA are different from IEAs from the MGI pipeline, see https://github.com/geneontology/go-annotation/issues/4831#event-11013111968
GOA has prioritization rules to avoid redundant annotations
GPAD2.0
Seth
Pipeline will switch to GPAD2.0 sometime in the upcoming weeks (early 2024). Date not set yet, since the code is not yet ready.
Yeast pathways load
Issue with 'sets', ie activity units with > 1 enabler. This is failing ShEx.
Need a decision about using 'enables by' in extensions
https://github.com/geneontology/minerva/issues/534#issuecomment-1830975286
Main points and AI from Fall 2023 GOC meeting
https://docs.google.com/document/d/15ePOkbY4whF5kQIabieFD5JfxfHdclUqoHcyykmqzK0/edit