Projects update meeting 2023-11-29

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Attendees

  • Members: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Chris, Cynthia
  • Present: David, Jim, Kimberly, Pascale, Seth, Suzi, Huaiyu, Paul, Cynthia
  • Regrets: Chris

Projects status

https://github.com/orgs/geneontology/projects/108/views/1

David's retirement

Li is taking David's role as contact person at MGI

MGI loads

David noticed that IEAs from GOA are different from IEAs from the MGI pipeline, see https://github.com/geneontology/go-annotation/issues/4831#event-11013111968

GOA has prioritization rules to avoid redundant annotations

GPAD2.0

Seth

Pipeline will switch to GPAD2.0 sometime in the upcoming weeks (early 2024). Date not set yet, since the code is not yet ready.

Yeast pathways load

Issue with 'sets', ie activity units with > 1 enabler. This is failing ShEx.

Need a decision about using 'enables by' in extensions

https://github.com/geneontology/minerva/issues/534#issuecomment-1830975286


Main points and AI from Fall 2023 GOC meeting

https://docs.google.com/document/d/15ePOkbY4whF5kQIabieFD5JfxfHdclUqoHcyykmqzK0/edit

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