Projects update meeting 2024-04-09
Attendees
- Members: Kimberly, Pascale, Seth, Suzi, Jim, Huaiyu, Paul, Chris, Cynthia
- Present:
- Regrets:
GO meeting
- Registration by April 12th
- Agenda by May 1st
- Which days do we need on either side?
- Draft agenda: https://docs.google.com/document/d/1FwGxa4jx8rJFjWBcbn4Q7ZzOHCY6-oF0azOrtK3quyk/edit#heading=h.2jptrbvdxk9r
- GO Users meeting: https://docs.google.com/document/d/1sIamECzTS5IMOy4GeldzWXdawnmOLvT9s5vClMAs3Bo/edit
Update on projects
https://github.com/orgs/geneontology/projects/108
GO website
Suzi
- Downloads page: currently we direct users to https://current.geneontology.org/products/pages/downloads.html
- New page in progress that will have a table instead- but we currently don't have the PAN-GO links needed, nor do we have "all annotations" links for any of the ~150 organisms in the proposed table
Issues arising from users questions
- Helpdesk: Submitting large numbers of annotations
- entity types : https://github.com/geneontology/go-site/issues/2246
- Pascale
- 'genes' are outside the scope of GO; semantically, a gene cannot have a function, so even though entities may represent 'genes' or 'protein-coding genes', foe GO, the function should be associated with the product that mediates the function, for example 'protein' (and not 'protein-coding gene')