Projects update meeting 2024-04-24
Attendees
- Members: Kimberly, Pascale, Seth, Suzi, Jim, Huaiyu, Paul, Cynthia
- Present:
- Regrets: Chris
Announcement: reduced frequency some group GO calls
- Managers: twice monthly (unchanged) on second and fourth Tuesday
- Annotation: once monthly on second Tuesday
- (PI goes to monthly)
- New Teams Coordination call with Seth, Kimberly, Pascale, Paul and Chris - monthly
GO meeting
- Registration 'closed'
- Monday: users meeting: https://docs.google.com/document/d/1sIamECzTS5IMOy4GeldzWXdawnmOLvT9s5vClMAs3Bo/edit
- Friday: managers meeting
- Draft agenda: https://docs.google.com/document/d/1FwGxa4jx8rJFjWBcbn4Q7ZzOHCY6-oF0azOrtK3quyk/edit#heading=h.2jptrbvdxk9r
GO meeting agenda
Need to wrap up
Update on projects
https://github.com/orgs/geneontology/projects/108
From last call - do we need clarification on these
GO website
Suzi
- Downloads page: currently we direct users to https://current.geneontology.org/products/pages/downloads.html
- New page in progress that will have a table instead- but we currently don't have the PAN-GO links needed, nor do we have "all annotations" links for any of the ~150 organisms in the proposed table
GPAD/GPI2.0
- Plan for switch : need examples of files and make the announcement
- Are these going to be the files that we ask users to consume? Or is this an internal product?
Issues arising from users questions
- Helpdesk: Submitting large numbers of annotations
- entity types : https://github.com/geneontology/go-site/issues/2246
- Pascale
- 'genes' are outside the scope of GO; semantically, a gene cannot have a function, so even though entities may represent 'genes' or 'protein-coding genes', foe GO, the function should be associated with the product that mediates the function, for example 'protein' (and not 'protein-coding gene')