Projects update meeting 2024-09-11
Attendees
- Members: Chris, Kimberly, Pascale, Seth, Suzi, Jim, Huaiyu, Cynthia, Paul?
- Present: Chris, Kimberly, Pascale, Seth, Jim, Huaiyu, Paul, Cynthia
- Regrets: Suzi
Announcements
Paul out the next 2 weeks & next week is the Alliance F2F meeting.
Discussion points
Noctua plans
Kimberly
- Wrapping up the standard annotations editor project and then for future Noctua projects.
- https://github.com/orgs/geneontology/projects/148
- Form software ready to be deployed on prod; however this will NOT include model type (GO-CAM versus standard annotation), since this required a newer version of Java.
- Anushya is working on a method to deploy Noctua on AWS, which will bypass that issue.
- We don't know when she will be done, probably 2-x weeks (possibly before the GOC meeting). To be confirmed as she makes progress.
- Next Tremayne will focus on improving the VPE; Seth will create a project and Kimberly and Paul will add tickets as appropriate (and her or Paul will create a new ticket)
- Tomorrow on the Pathways2GO and GO-CAM call we will discuss complexes. Tomorrow focus will be on information gathering about how people want to use complexes in GO-CAM.
GOA pipeline switch
Release status
We can do a release but this would not have the GPAD2.0. But this has been since June, we should do a new release.
Interontology links
- Are these in or out ?
- GOA produces annotations predicted from Function > process links
- Evidence:
- when go_evidence = 'IEA' then 'ECO:0000366' -- evidence based on logical inference from automatic annotation used in automatic assertion
- else 'ECO:0000364' -- evidence based on logical inference from manual annotation used in automatic assertion
- Reference: original reference is inherited from the source annotation
GOC meeting agenda
Outstanding discussion points for a future call
New Downloads table
- https://geneontology.org/docs/downloads/
- https://github.com/geneontology/geneontology.github.io/issues/525
Outreach plan
Suzi