Provides input for: Difference between revisions
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== Annotation Usage Guidelines== | == Annotation Usage Guidelines== | ||
* Standard Annotation | * Standard Annotation | ||
** | ** 'directly provides input for' should not be used for conventional annotations. Instead its use should be reserved for GO-CAM models. | ||
* GO-CAM Annotation | * GO-CAM Annotation | ||
**'directly provides input' should be reserved to related successive Molecular Functions in GO-CAM models. | |||
**Usage Examples | |||
***In glycolysis, triose phosphate isomerase activity (MF) 'directly provides input for' glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (MF). | |||
**** triose phosphate isomerase activity converts dihydroxyacetone phosphate (input) to glyceraldehyde-3-phosphate (output) as part of glycolysis. Glyceraldehyde-3-phosphate dehydrogenase converts glyceraldehyde-3-phosphate (input) to 3-phosphonato-D-glyceroyl phosphate(4−) (output). | |||
****http://noctua.geneontology.org/editor/graph/gomodel:632cf60a00000208 | |||
***A glucose tansmembrane transporter activity (MF) 'directly provides input for' lactose synthase activity (MF). | |||
***** cytosolic glucose (input) is transported across the Golgi membrane to become Golgi-lumenal glucose (output). In the Golgi lumen the Golgi-lumenal glucose (input) is converted into lactose (output). | |||
*****http://noctua.geneontology.org/editor/graph/gomodel:632cf60a00000239? | |||
==Ontology Usage Guidelines== | ==Ontology Usage Guidelines== | ||
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* Domain: Domain refers to the ontology terms that can be further specified with the relation. | * Domain: Domain refers to the ontology terms that can be further specified with the relation. | ||
* Range: Range describes the ontology terms that can be used to further specify the domain using the relation. | * Range: Range describes the ontology terms that can be used to further specify the domain using the relation. | ||
== Quality Control Checks == | == Quality Control Checks == | ||
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Reviewed: September 27, 2022 DavidH | Reviewed: September 27, 2022 DavidH | ||
Reveiwed: October | Reveiwed: October 26, 2022 DavidH | ||
Revision as of 10:48, 26 October 2022
Overview
- The 'directly provides input for' relation is used to relate two GO Molecular Functions when:
- Two Molecular Functions succeed one another directly
- The output of the first molecular function is an input of the second Molecular Function.
The 'directly provides input for' relation is most commonly used between successive steps of a metabolic pathway.
Annotation Usage Guidelines
- Standard Annotation
- 'directly provides input for' should not be used for conventional annotations. Instead its use should be reserved for GO-CAM models.
- GO-CAM Annotation
- 'directly provides input' should be reserved to related successive Molecular Functions in GO-CAM models.
- Usage Examples
- In glycolysis, triose phosphate isomerase activity (MF) 'directly provides input for' glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (MF).
- triose phosphate isomerase activity converts dihydroxyacetone phosphate (input) to glyceraldehyde-3-phosphate (output) as part of glycolysis. Glyceraldehyde-3-phosphate dehydrogenase converts glyceraldehyde-3-phosphate (input) to 3-phosphonato-D-glyceroyl phosphate(4−) (output).
- http://noctua.geneontology.org/editor/graph/gomodel:632cf60a00000208
- A glucose tansmembrane transporter activity (MF) 'directly provides input for' lactose synthase activity (MF).
- cytosolic glucose (input) is transported across the Golgi membrane to become Golgi-lumenal glucose (output). In the Golgi lumen the Golgi-lumenal glucose (input) is converted into lactose (output).
- http://noctua.geneontology.org/editor/graph/gomodel:632cf60a00000239?
- In glycolysis, triose phosphate isomerase activity (MF) 'directly provides input for' glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (MF).
Ontology Usage Guidelines
Scope of Use
- Domain: Domain refers to the ontology terms that can be further specified with the relation.
- Range: Range describes the ontology terms that can be used to further specify the domain using the relation.
Quality Control Checks
- Shex
- https://github.com/geneontology/go-shapes/blob/master/shapes/go-cam-shapes.shex
- Search this file for 'directly_provides_input_for'.
Child Terms
Cross Reference to the Relation Ontology (RO)
Review Status
Reviewed: May 11, 2018
Reviewed: September 27, 2022 DavidH
Reveiwed: October 26, 2022 DavidH