Provides input for: Difference between revisions
Jump to navigation
Jump to search
m (→Examples) |
|||
Line 21: | Line 21: | ||
== Cross Reference to the Relation Ontology (RO) == | == Cross Reference to the Relation Ontology (RO) == | ||
[http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002413 | [http://www.ontobee.org/ontology/RO?iri=http://purl.obolibrary.org/obo/RO_0002413 provides input for] | ||
== Review Status == | == Review Status == |
Revision as of 06:01, 8 February 2023
Overview and Scope of Use
- This relation is used in GO-CAMs but not in standard annotation extensions.
- This relation is intended to connect successive enzymatic reactions in a pathway, i.e. where the product (output) of the upstream activity is the substrate (input) for the downstream activity.
- When the output molecule of the upstream activity is available in ChEBI, curators should not use this relation, and should instead connect the successive activities via the output molecule: [upstream] has_output [ChEBI] is_input [downstream].
- When the output molecule is not available (usually a modified protein or RNA), use: [upstream] provides_input_for [downstream].
- The 'provides input for' relation is used to relate two GO Molecular Functions when:
- Two Molecular Functions succeed one another directly
- The output of the first molecular function is an input of the second Molecular Function.
- The output of the first molecular function is not available in ChEBI.
Annotation Usage Guidelines
- 'provides input for' should be reserved to related successive Molecular Functions in GO-CAM models.
Examples
Ontology Usage Guidelines
- This relation is not used in the ontology.
Cross Reference to the Relation Ontology (RO)
Review Status
Reviewed: Nov 2, 2022 DavidH