RefGenProgress 2008-06-18 (Archived): Difference between revisions

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m (New page: ==Monthly conference call: June 10th, 2008 - See RefGenome10Jun08_Phone_Conference RefGenome10Jun08_Phone_Conference for complete minutes '''Highlights of the June 10th conference ca...)
 
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==Monthly conference call: June 10th, 2008
==Monthly conference call: June 10th, 2008
- See [[RefGenome10Jun08_Phone_Conference RefGenome10Jun08_Phone_Conference]] for complete minutes
- See [[RefGenome10Jun08_Phone_Conference RefGenome10Jun08_Phone_Conference]] for complete minutes


'''Highlights of the June 10th conference call'''
'''Highlights of the June 10th conference call'''
- Software group is making progress on integrating the ref genome annotations into AmiGO
*Software group is making progress on integrating the ref genome annotations into AmiGO
- Paul Thomas has started the Panther analysis on the ref genome gene product sets
*Paul Thomas has started the Panther analysis on the ref genome gene product sets
- Now using Kara's PPOD sets as source of curation targets
*Now using Kara's PPOD sets as source of curation targets
- Annotation QC: discussed GRIN1; long discussion about annotating to x protein binding (F) and complex (C) when those two annotations are redundant (here: glutamate receptor binding & glutamate receptor complex). We agreed that, as a general rule, this practice is incorrect; however it is possible that depending on the data available this will happen.  
*Annotation QC: discussed GRIN1; long discussion about annotating to x protein binding (F) and complex (C) when those two annotations are redundant (here: glutamate receptor binding & glutamate receptor complex). We agreed that, as a general rule, this practice is incorrect; however it is possible that depending on the data available this will happen.  
- Another issue was concerning the difficulty to annotate to a process versus regulation of that process.  
*Another issue was concerning the difficulty to annotate to a process versus regulation of that process.  


Back to [[Reference_Genome_Annotation_Project]]
Back to [[Reference_Genome_Annotation_Project]]

Revision as of 08:56, 18 June 2008

==Monthly conference call: June 10th, 2008 - See RefGenome10Jun08_Phone_Conference RefGenome10Jun08_Phone_Conference for complete minutes

Highlights of the June 10th conference call

  • Software group is making progress on integrating the ref genome annotations into AmiGO
  • Paul Thomas has started the Panther analysis on the ref genome gene product sets
  • Now using Kara's PPOD sets as source of curation targets
  • Annotation QC: discussed GRIN1; long discussion about annotating to x protein binding (F) and complex (C) when those two annotations are redundant (here: glutamate receptor binding & glutamate receptor complex). We agreed that, as a general rule, this practice is incorrect; however it is possible that depending on the data available this will happen.
  • Another issue was concerning the difficulty to annotate to a process versus regulation of that process.

Back to Reference_Genome_Annotation_Project

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