RefGenome12Feb08 Phone Conference (Archived): Difference between revisions

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Please review the graphs and let me know if you notice missing orthologs or annotations -- I am still doing a lot of data editing manually  :(
Please review the graphs and let me know if you notice missing orthologs or annotations -- I am still doing a lot of data editing manually  :(
==ACTION ITEMSs==
*  [ACTION ITEM] Go over the issues relating to quality control. Suzi will email the group, and we will set up a meeting with all those who want to participate.
* [ACTION ITEM]: (Chris/AmiGO) Look into loading IEAs for reference genome set into AmiGO


==Next conference call==
==Next conference call==

Revision as of 19:30, 8 February 2008

Tuesday February 12, 10 AM CDT (8 AM PDT, 4 PM BST)

Present

Next Reference Genome Meeting

April 20-21, Salt Lake City

This will be followed by a GO Consortium Meeting on April 22 and 23 in Salt Lake City.

Karen Eilbeck: host

Orthology determination

Kara: update


Curation tool update

Chris, Siddhartha, Seth, Mary, Pascale, David, Doug

Updated graphs

Mary

  • I have posted new refG graphs (temporarily) at:

http://proto.informatics.jax.org/prototypes/GOgraphEX/RefGenomeGraphs/ We will move them to the GO site when refG folks have had a chance to review them (some time next week?)

To simplify comparison of organism annotations (and following Chris' lead on detecting outliers) I have modified the comparison matrix to show only high order GO terms, e.g. PEX1 http://proto.informatics.jax.org/prototypes/GOgraphEX/RefGenomeGraphs/5189.html#Slim or POLA http://proto.informatics.jax.org/prototypes/GOgraphEX/RefGenomeGraphs/5422.html#Slim

Please review the graphs and let me know if you notice missing orthologs or annotations -- I am still doing a lot of data editing manually  :(


ACTION ITEMSs

  • [ACTION ITEM] Go over the issues relating to quality control. Suzi will email the group, and we will set up a meeting with all those who want to participate.
  • [ACTION ITEM]: (Chris/AmiGO) Look into loading IEAs for reference genome set into AmiGO

Next conference call

Tuesday March 11, 2008, 1 PM CDT, 11 AM PDT, 7 PM GMT

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