RefGenome9Sept08 Phone Conference (Archived): Difference between revisions
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[http://www.doodle.ch/xuidz35n52zdr9a6 http://www.doodle.ch/xuidz35n52zdr9a6] | [http://www.doodle.ch/xuidz35n52zdr9a6 http://www.doodle.ch/xuidz35n52zdr9a6] | ||
==Software== | |||
* Nothing much to report, still waiting for a new server at Berkeley (Seth) | |||
==Curation Targets== | ==Curation Targets== |
Revision as of 14:18, 9 September 2008
Present
- Varsha Khodiyar
- Ruth Lovering
- Pascale Gaudet
- Emily Dimmer
- Kara Dolinski
- Tanya Berardini
- Donghui Li
- Fiona McCarthy
- Kimberly Van Auken
- Ranjana Kishore
- Mary Dolan
- Chris
- Seth
- Amelia
- Paul Thomas
- Judy Blaske
- Stacia
- Jim
- Debbie
- Li
Electronic Jamboree
Best date so far is Friday, Oct 10. Please vote by the end of this week (Sept 12)
http://www.doodle.ch/xuidz35n52zdr9a6
Software
- Nothing much to report, still waiting for a new server at Berkeley (Seth)
Curation Targets
- September 2008: Val's lists of 'unknowns'
- Suggestions for October?
Discuss annotation issues
- 'Response to x': Tanya Annotation_consistency:_'Response_to'_terms
- HTP: Emily Annotation_consistency:_HTP
Review old/ongoing action items
- Pascale: schedule electronic meeting in October
- Debby: Put in a SourceForge request that definitions of terms for oligomerization, dimerization, protein complex assembly etc. should be clarified as to their use and annotations using these terms be checked and, if necessary, changed.
- Emily and Debby: Clarify GO:0006730 one-carbon compound metabolic process and GO:0019438 aromatic compound biosynthetic process - these terms were added by the HAMAP and InterPro groups. Both of those processes involve enzymes that use a folic acid derivative as a coenzyme, but Debbie didn't think that FolE (which catalyzes the first committed step in folic acid biosynthetic) should be annotated to those processes.
- Susan: Request new term for Regulation of GTP Cyclohydrolase I activity. term requested
- Victoria: Make a SourceForge request to clarify the definitions of unfolded/misfolded protein binding and add chaperone activity as a synonym to both of the terms. Also add ‘de novo’ synonym to ‘unfolded protein binding’.
- Annotation_consistency:_IDA_or_IC_for_processes :Tanya Berardini, Emily Dimmer, Pascale Gaudet, Chris Mungall, Kimberly VanAuken, David Hill
- Annotation_consistency:_HTP : Stacia SGD_GO_HTP_guidelines
- Annotation consistency: x protein binding and with : Becky, David
- Annotation consistency: Using IEP : Emily, Pascale, Ruth, Stacia
- Annotation consistency: 'Response to' terms Assigned to Tanya : Proper evidence code to use for to 'response to xx'? :Emily, Pascale
- Annotation consistency: xx binding in the context of gene product : Victoria, Pascale, David
- All (ongoing): Annotation Quality control: Please pick an ortholog set from the Curation Targets table [1] see also Annotation_QC for some general documentation and previous issues
- All (ongoing): Annotation Quality control: Have a look at the SF items and see if the ortholog from your organism is correctly annotated ("comprehensive"). Let lead curator for that set know that you're done.
PPOD update
PANTHR update
Annotation tracker update
Source Forge QC discussion
Next conference call
Tuesday October 14, 2008, 10 AM CDT, 8 AM PDT, 4 PM BST
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