Reference Genome January 2010 (Archived)

From GO Wiki
Revision as of 12:13, 1 February 2010 by Pascale (talk | contribs)
Jump to navigation Jump to search

Announcements

=Electronic annotation jamboree

GO reference genome annotation camp


Lung development project

The last set of targets for the lung development project has been sent. We aim to have all annotations done by March 1st in order to annotate the trees between March and April 2010.

PAINT update

  • Process annotations can now be done using a grid view, in addition to the tree view. Ed Lee is working on extending this to F and C.

PPOD update

Kara and her group did a new run on the 12 Reference Genome protein sets using a new version of OrthoMCL. These results are viewable on the web. In addition, we ran OrthoMCL on all 48 PANTHER species for incorporation into PAINT; currently, these data are only available for bulk download because we have not yet scaled our web interface to handle the much larger families.

Note that the PPOD IDs have changed from previous versions. Kara is working on having all the information re-mapped in the google spreadsheets by the next Ref Genome call. [edit]

GO mirror at Princeton

  • Princeton has set up a GO mirror

Monthly conference call

Was held January 12. Minutes are available here: http://gocwiki.geneontology.org/index.php/12_JAN_2010_RefGen_Phone_Conference


Back to Reference_Genome_Annotation_Project#Progress_Reports