Reference Genome Timeline-Jan-Jun2011 (Archived)

Project	Jan 2011	Feb 2011	March 2011	April 2011	May 2011	June 2011
PAINT (Ed, Suzi, Paul)	Latest version is Beta35	Latest version is Beta36		Latest version is Beta37
Panther protein families (Paul)	Latest version is V7, with 48 species
MOD curation	on hold	on hold	on hold	on hold	Heart Development Transcription factors: Project leaders: Varsha Khodiyar, Suzi Lewis	Heart tx - continuted
Protein family annotation	Train new curators	Train new curators
Curation report (Kara, Sven, Seth, Chris)	http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree	Public version?		New functionality?
Papers		PAINT Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.	We'd like at least one paper to be submitted before the grant.