Reference Genome Timeline-Jan-Jun2011 (Archived)

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Revision as of 07:35, 23 February 2011 by Pascale (talk | contribs) (Created page with '{|border="1" cell spacing="0" cellpadding="5" align="center" !Project !Jan 2011 !Feb 2011 !March 2011 !April 2011 !May 2011 !June 2011 |- |PAINT (Ed, Suzi, Paul) |Latest version …')
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Project Jan 2011 Feb 2011 March 2011 April 2011 May 2011 June 2011
PAINT (Ed, Suzi, Paul) Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
Panther protein families (Paul) Latest version is V7, with 48 species
MOD curation wnt : Project leaders: Varsha Khodiyar, Suzi Lewis wnt wnt wnt wnt wnt
Protein family annotation p53, MutS/MSH wnt wnt wnt wnt wnt
Curation report (Kara, Sven, Seth, Chris) http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree Public version?
Papers
  • PAINT
  • Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
  • Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
We'd like at least one paper to be submitted before the grant.