Reference Genome Timeline-Jan-Jun2011 (Archived)

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Project Jan 2011 Feb 2011 March 2011 April 2011 May 2011 June 2011
PAINT (Ed, Suzi, Paul) Latest version is Beta35
Panther protein families (Paul) Latest version is V7, with 48 species
MOD curation on hold on hold apoptosis apoptosis wnt Batch 2: Project leaders: Varsha Khodiyar, Suzi Lewis wnt Batch 2
Protein family annotation clear backlog (~500 families) clear backlog (~500 families) clear backlog (~500 families)
Curation report (Kara, Sven, Seth, Chris) http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree Public version? New functionality?
Papers
  • PAINT
  • Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
  • Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
We'd like at least one paper to be submitted before the grant.