Project
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Jan 2011
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Feb 2011
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March 2011
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April 2011
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May 2011
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June 2011
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PAINT (Ed, Suzi, Paul)
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Latest version is Beta35
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Latest version is Beta36
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Latest version is Beta37
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Panther protein families (Paul)
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Latest version is V7, with 48 species
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MOD curation
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on hold
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on hold
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on hold
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on hold
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Heart Transcription factors: Project leaders: Varsha Khodiyar, Suzi Lewis
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Heart Transcription factors:
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Protein family annotation
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clear backlog (~450 families)
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clear backlog (~450 families)
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clear backlog (~450 families)
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Curation report (Kara, Sven, Seth, Chris)
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http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree
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Public version?
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New functionality?
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Papers
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- PAINT
- Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
- Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
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We'd like at least one paper to be submitted before the grant.
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