Reference Genome Timeline-June-Dec2010 (Archived): Difference between revisions
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| | |* PAINT | ||
| | * Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences | ||
* Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC. | |||
| We'd like at least one paper to be submitted before the grant. | |||
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Revision as of 18:42, 9 August 2010
Project | June 2010 | July 2010 | August 2010 | September 2010 | October 2010 | November 2010 | December 2010 |
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PAINT (Ed, Suzi, Paul) | Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010. | ||||||
Panther protein families (Paul) | Latest version is V7, with 42 species | ||||||
MOD curation | wnt : Project leaders: Varsha Khodiyar, Suzu Lewis | wnt | wnt | wnt | |||
Protein family annotation | p53, MutS/MSH | wnt | wnt | wnt | wnt | ||
Curation report (Kara, Stan, Seth, Chris) | |||||||
Papers | * PAINT
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We'd like at least one paper to be submitted before the grant. |