Reference Genome Timeline-June-Dec2010 (Archived)

Project	June 2010	July 2010	August 2010	September 2010	October 2010	November 2010	December 2010
PAINT (Ed, Suzi, Paul)	Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
Panther protein families (Paul)	Latest version is V7, with 42 species
MOD curation	wnt : Project leaders: Varsha Khodiyar, Suzu Lewis	wnt	wnt	wnt	project to be determined (autophagy? cell motility?)
Protein family annotation	p53, MutS/MSH	wnt	wnt	wnt	wnt
Curation report (Kara, Stan, Seth, Chris)			http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree	Public version?
Papers			PAINT Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.	We'd like at least one paper to be submitted before the grant.