Reference Genome Timeline-June-Dec2010 (Archived): Difference between revisions
Jump to navigation
Jump to search
mNo edit summary |
m (Pascale moved page Reference Genome Timeline-June-Dec2010 to Reference Genome Timeline-June-Dec2010 (Archived)) |
||
(10 intermediate revisions by 3 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:Reference Genome]] [[Category:Timelines]] [[Category:Archived]] | |||
{|border="1" cell spacing="0" cellpadding="5" align="center" | {|border="1" cell spacing="0" cellpadding="5" align="center" | ||
!Project | !Project | ||
Line 19: | Line 20: | ||
|- | |- | ||
|Panther protein families (Paul) | |Panther protein families (Paul) | ||
|Latest version is V7, with | |Latest version is V7, with 48 species | ||
| | | | ||
| | | | ||
Line 28: | Line 29: | ||
|- | |- | ||
|MOD curation | |MOD curation | ||
|wnt : Project leaders: Varsha Khodiyar, | |wnt : Project leaders: Varsha Khodiyar, Suzi Lewis | ||
|wnt | |||
|wnt | |||
|wnt | |||
|wnt | |wnt | ||
|wnt | |wnt | ||
|wnt | |wnt | ||
|- | |- | ||
|Protein family annotation | |Protein family annotation | ||
Line 42: | Line 43: | ||
|wnt | |wnt | ||
|wnt | |wnt | ||
| | |wnt | ||
| | |wnt | ||
|- | |- | ||
|Curation report (Kara, | |Curation report (Kara, Sven, Seth, Chris) | ||
| | | | ||
| | | | ||
|http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree | |||
|Public version? | |||
| | |||
| | | | ||
| | | | ||
Line 57: | Line 58: | ||
| | | | ||
| | | | ||
|* PAINT | | | ||
* PAINT | |||
* Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences | * Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences | ||
* Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC. | * Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC. |
Revision as of 11:08, 16 January 2018
Project | June 2010 | July 2010 | August 2010 | September 2010 | October 2010 | November 2010 | December 2010 |
---|---|---|---|---|---|---|---|
PAINT (Ed, Suzi, Paul) | Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010. | ||||||
Panther protein families (Paul) | Latest version is V7, with 48 species | ||||||
MOD curation | wnt : Project leaders: Varsha Khodiyar, Suzi Lewis | wnt | wnt | wnt | wnt | wnt | wnt |
Protein family annotation | p53, MutS/MSH | wnt | wnt | wnt | wnt | wnt | wnt |
Curation report (Kara, Sven, Seth, Chris) | http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree | Public version? | |||||
Papers |
|
We'd like at least one paper to be submitted before the grant. |