Project
|
June 2010
|
July 2010
|
August 2010
|
September 2010
|
October 2010
|
November 2010
|
December 2010
|
PAINT (Ed, Suzi, Paul)
|
Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
|
|
|
|
|
|
|
Panther protein families (Paul)
|
Latest version is V7, with 42 species
|
|
|
|
|
|
|
MOD curation
|
wnt : Project leaders: Varsha Khodiyar, Suzu Lewis
|
wnt
|
wnt
|
wnt
|
|
|
|
Protein family annotation
|
p53, MutS/MSH
|
wnt
|
wnt
|
wnt
|
wnt
|
|
|
Curation report (Kara, Stan, Seth, Chris)
|
|
|
http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree
|
Public version?
|
|
|
|
Papers
|
|
|
- PAINT
- Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
- Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
|
We'd like at least one paper to be submitted before the grant.
|
|
|
|