Project
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June 2010
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July 2010
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August 2010
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September 2010
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October 2010
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November 2010
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December 2010
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PAINT (Ed, Suzi, Paul)
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Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
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Panther protein families (Paul)
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Latest version is V7, with 48 species
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MOD curation
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wnt : Project leaders: Varsha Khodiyar, Suzi Lewis
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wnt
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wnt
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wnt
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wnt
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wnt
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wnt
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Protein family annotation
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p53, MutS/MSH
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wnt
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wnt
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wnt
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wnt
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wnt
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wnt
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Curation report (Kara, Sven, Seth, Chris)
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http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree
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Public version?
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Papers
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- PAINT
- Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
- Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
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We'd like at least one paper to be submitted before the grant.
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