Reference Genome sequence annotation (Retired): Difference between revisions
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|'''Date''' | |'''Date''' | ||
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| | |Drosophila melanogaster (Fruitfly) | ||
|[http://www.flybase.org FlyBase] | |[http://www.flybase.org FlyBase] | ||
|ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff | |ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff | ||
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|Pombe () | |Pombe () | ||
|[http://www.sanger. | |[http://www.sanger.ac.uk/Projects/S_pombe/ Sanger Centre] | ||
|? | |? | ||
|? | |? | ||
Revision as of 13:07, 14 September 2007
The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.
| Organism | Organization | Download | Date |
| Drosophila melanogaster (Fruitfly) | FlyBase | ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff | 9/12/07 |
| Caenorhabditis elegans (Worm) | WormBase | ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3 | ? |
| Saccharomyces cerevisiae (Budding yeast) | SGD | ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff | ? |
| Arabidopsis | Gramene | ftp://ftp.gramene.org/pub/gramene/release19/data/sequence_annotation/gff3 | 7/16/07 |
| Zebrafish | ZFIN | ? | ? |
| Mouse | MGI | ? | ? |
| Human | ? | ? | ? |
| Pombe () | Sanger Centre | ? | ? |
| E.coli | ASAP | https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID= | ? |