Reference Genome sequence annotation (Retired): Difference between revisions
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|Danio rerio (Zebrafish) | |Danio rerio (Zebrafish) | ||
|[http://zfin.org | |[http://zfin.org ZFIN] | ||
| | |Vega: ftp://ftp.sanger.ac.uk/pub/vega/danio/gff3/vega_danio_rerio_20070523.gff3 | ||
| | |Ensembl: ftp://ftp.ensembl.org/pub/current_danio_rerio/data/gtf/Danio_rerio.ZFISH7.46.gtf.gz | ||
|- | |- | ||
|Mouse | |Mouse |
Revision as of 12:08, 19 September 2007
The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.
For discussion on standardizing URLs for accessing this information please see the GMOD wiki page Standard URL
Nota bene
- The human data is in GTF (not GFF3)
- The pombe files are not (yet) valid GFF3. The known problems are:
- extra column 10 "Name"
- extra column 11 "orf_classification"
- extra column 12 "gene"
- extra column 13 "chr"
- the mandatory "phase" column isn't filled in.
- and the attributes" column may not be formatted correctly.
Back to: Reference_Genome_Focus