Difference between revisions of "Release Pipeline"

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(Created page with "== Per-group curator QC reports == Every day a dry-run of the full pipeline runs. We call this __snapshot__. As part of this run, we generate *products* and *reports* that ar...")
 
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== Per-group curator QC reports ==
== Per-group curator QC reports ==


Every day a dry-run of the full pipeline runs. We call this __snapshot__. As part of this run, we generate *products* and *reports* that are of use to db admins and curators of the various contributing groups (MODs, UniProt, etc) to the GO Consortium.
Every day a dry-run of the full pipeline runs. We call this '''snapshot'''. As part of this run, we generate ''products'' and ''reports'' that are of use to db admins and curators of the various contributing groups (MODs, UniProt, etc) to the GO Consortium.


*http://snapshot.geneontology.org/reports/
*http://snapshot.geneontology.org/reports/
** summary.txt. EXAMPLE: [http://snapshot.geneontology.org/reports/dictybase-summary.txt dictybase-summary.txt]
** summary.txt. EXAMPLE: [http://snapshot.geneontology.org/reports/dictybase.report.md dictybase.report.md]
** prediction-report.txt EXAMPLE: [http://snapshot.geneontology.org/reports/mgi-prediction-report.txt mgi-prediction-report.txt]
** owltools-check.txt EXAMPLE: [http://snapshot.geneontology.org/reports/mgi-owltools-check.txt mgi-owltools-check.txt]
*http://snapshot.geneontology.org/products/annotations/
*http://snapshot.geneontology.org/products/annotations/
** GROUP-prediction.gaf EXAMPLE: [pombase-prediction.gaf](http://snapshot.geneontology.org/products/annotations/pombase-prediction.gaf)
** GROUP-prediction.gaf EXAMPLE: [http://snapshot.geneontology.org/products/annotations/pombase-prediction.gaf pombase-prediction.gaf]


=== Summary ===
This is a basic summary of the parsing of your GAF file. It functionally replaces the old "Mike's script"
These are found in [http://snapshot.geneontology.org/reports/ reports]
Example: http://snapshot.geneontology.org/reports/dictybase.report.md
These report basic syntax errors and implement a subset of checks in the [[GO QC Rules]]
=== Prediction Report and OwlTools Checks ===
=== Predictions ===


== Technical Details ==
== Technical Details ==

Revision as of 19:01, 29 March 2018

Per-group curator QC reports

Every day a dry-run of the full pipeline runs. We call this snapshot. As part of this run, we generate products and reports that are of use to db admins and curators of the various contributing groups (MODs, UniProt, etc) to the GO Consortium.

Summary

This is a basic summary of the parsing of your GAF file. It functionally replaces the old "Mike's script"

These are found in reports

Example: http://snapshot.geneontology.org/reports/dictybase.report.md

These report basic syntax errors and implement a subset of checks in the GO QC Rules

Prediction Report and OwlTools Checks

Predictions

Technical Details

See the README.md in the github repo: https://github.com/geneontology/pipeline/blob/snapshot/README.md