Difference between revisions of "Requesting a New Complex ID from ComplexPortal"
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(Created page with "Users can request complex IDs from IntAct by filling the Complex submission template and emailing it to intact-help@ebi.ac.uk or bmeldal@ebi.ac.uk with as much detail as possi...") |
m (Pascale moved page Requesting a New Complex ID from IntAct to Requesting a New Complex ID from ComplexPortal) |
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Users can request complex IDs from | Users can request complex IDs from Complex Portal by sending a message via the yellow tile on the [https://www.ebi.ac.uk/complexportal/home Homepage] "Request Complex for curation" or emailing complexportal@ebi.ac.uk with as much detail as possible. | ||
==Complex submission template== | ==Complex submission template== | ||
* Please supply as much information as possible to allow us to make your term. | * Please supply as much information as possible to allow us to make your term. | ||
* Find definition at: | * Find definition at: http://www.ebi.ac.uk/complexportal/documentation/data_content and http://wiki.geneontology.org/index.php/Guidelines_on_%27protein_complex%27_terms | ||
http://www.ebi.ac.uk/complexportal/documentation/data_content | |||
and | |||
http://wiki.geneontology.org/index.php/Guidelines_on_%27protein_complex%27_terms | |||
===Complex names=== | ===Complex names=== | ||
Most commonly known name (recommended name): | * Most commonly known name (recommended name): | ||
Synonyms (could be any and many!): | * Synonyms (could be any and many!): | ||
===Participants=== | ===Participants=== | ||
UniProt IDs for proteins (and their binding regions and stoichiometry - if available) | * [http://www.uniprot.org UniProt] IDs for proteins (and their binding regions and stoichiometry - if available) | ||
ChEBI IDs for small molecules (and stoichiometry - if available) | * [https://www.ebi.ac.uk/chebi ChEBI] IDs for small molecules (and stoichiometry - if available) | ||
RNAcentral IDs for ncRNAs (and stoichiometry - if available) | * [http://rnacentral.org RNAcentral] IDs for ncRNAs (and stoichiometry - if available) | ||
===Evidence=== | ===Evidence=== | ||
PMID for papers showing that the complex exists | * PMID for papers showing that the complex exists | ||
Note: | * Optional: Cross-reference to a evidence database, e.g. from [https://www.ebi.ac.uk/intact IntAct], [https://www.ebi.ac.uk/pdbe PDBe] or [https://www.ebi.ac.uk/pdbe/emdb/searchForm.html/ EMDB] | ||
* '''Note:''' The interaction evidence should include all or almost all complex members, not lots of binaries and not from high throughput experiments. | |||
===Description=== | ===Description=== | ||
A nice, concise description would help, similar to that required for GO term submissions | * A nice, concise description would help, similar to that required for GO term submissions. | ||
===GO annotations=== | ===GO annotations=== | ||
Any terms that apply to the COMPLEX: | Any terms that apply to the COMPLEX (as far as it's known): | ||
CC for the complex | * CC for the complex (child of GO:0032991 protein-containing complex) | ||
* CC for cellular location (e.g. nucleus, plasma membrane…) | |||
Please supply PMIDs | * MF: at least the central function of the complex | ||
* BPs: the process(es) the complex is involved in | |||
* Please supply PMIDs | |||
[[Category:GO Editors]][[Category:Ontology | == Review Status == | ||
Last reviewed: Nov 17, 2020 | |||
[[Category:GO Editors]][[Category:Ontology]] |
Latest revision as of 06:17, 17 November 2020
Users can request complex IDs from Complex Portal by sending a message via the yellow tile on the Homepage "Request Complex for curation" or emailing complexportal@ebi.ac.uk with as much detail as possible.
Complex submission template
- Please supply as much information as possible to allow us to make your term.
- Find definition at: http://www.ebi.ac.uk/complexportal/documentation/data_content and http://wiki.geneontology.org/index.php/Guidelines_on_%27protein_complex%27_terms
Complex names
- Most commonly known name (recommended name):
- Synonyms (could be any and many!):
Participants
- UniProt IDs for proteins (and their binding regions and stoichiometry - if available)
- ChEBI IDs for small molecules (and stoichiometry - if available)
- RNAcentral IDs for ncRNAs (and stoichiometry - if available)
Evidence
- PMID for papers showing that the complex exists
- Optional: Cross-reference to a evidence database, e.g. from IntAct, PDBe or EMDB
- Note: The interaction evidence should include all or almost all complex members, not lots of binaries and not from high throughput experiments.
Description
- A nice, concise description would help, similar to that required for GO term submissions.
GO annotations
Any terms that apply to the COMPLEX (as far as it's known):
- CC for the complex (child of GO:0032991 protein-containing complex)
- CC for cellular location (e.g. nucleus, plasma membrane…)
- MF: at least the central function of the complex
- BPs: the process(es) the complex is involved in
- Please supply PMIDs
Review Status
Last reviewed: Nov 17, 2020