Difference between revisions of "Running P-POD orthology tool on the reference genomes gene set (Retired)"

From GO Wiki
Jump to navigation Jump to search
Line 1: Line 1:
The current plan is to start with the gp2protein files, which we at Princeton will use to retrieve the actual protein sequences and generate fasta files.  We will use the following files from the GO site:


     * Arabidopsis thaliana gp2protein.tair.gz
     * Arabidopsis thaliana gp2protein.tair.gz

Revision as of 11:39, 18 January 2008

The current plan is to start with the gp2protein files, which we at Princeton will use to retrieve the actual protein sequences and generate fasta files. We will use the following files from the GO site:

   * Arabidopsis thaliana gp2protein.tair.gz
   * Caenorhabditis elegans  gp2protein.wb.gz
   * Danio rerio gp2protein.zfin.gz
   * Dictyostelium discoideum gp2protein.dictyBase.gz
   * Drosophila melanogaster gp2protein.fb.gz
   * Homo sapiens gp2protein.human.gz
   * Mus musculus gp2protein.mgi.gz
   * Saccharomyces cerevisiae gp2protein.sgd.gz
   * Schizosaccharomyces pombe gp2protein.genedb_spombe.gz
   * Rattus norvegicus  gp2protein file from RGD (pending)

And the Uniprot file will be used for these species:

   * Escherichia coli     
   * Gallus gallus