SWUG:Meeting 2010 10 27: Difference between revisions

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[[Category:SWUG Meetings]]
Conference call details: New GOC conference call numbers:
Conference call details: New GOC conference call numbers:


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** Release Schedule for [[AmiGO_1_9]]
** Release Schedule for [[AmiGO_1_9]]
* [[Production_and_GO_Admin#Switch to load-qfo-seqs.pl]]
* [[Production_and_GO_Admin#Switch to load-qfo-seqs.pl]]
** Existing sequence loading is slow and memory intensive
** New script depends on QFO fasta files provided by EBI
** ~60 genomes, subsumes RefG set
** also takes care of ID mapping / gp2protein
** Current issues:
** Current issues:
*** latest dump excludes DB prefixes
*** latest dump excludes DB prefixes
*** ACTION: Sven, report back
*** ACTION (from last mtg): Sven, report back
* [[Software_Group_2010_Future_Plans]] - any questions arising from presentation at GO meeting
** increased emphasis on reuse
** [[Transition to OWL]]
* [[Schema_Overhaul]]
* [[Schema_Overhaul]]
** ARRA Funding
**Brief report from Shahid on progress on:
** Berkeley - one hire 1 yr, starting October. Stanford: ?
*** ontol bulk loaders
** Proposed: Berkeley hire will focus on ontology related db elements, Stanford hire on annotations
*** hibernate layer
** New architecture: java, use of OWLAPI for ontologies
*** solr
** Dual db strategy: "gold", "lead" - bulk loading, less normalized schema, optimized for db loading and queries
* [[Annotation_Rule_Engine]]
** Exploration of non-relational technology: SOLR, triplestores, QuickGO indexes
** Emphasis on expressivity, being prepared for next 5-6 years
 
Idea: have SGD ARRA developer work on MART/Mine for GO? Use case: give all mammalian genes with annotations to term X
 
[[Category:SWUG Meeting]]

Latest revision as of 17:11, 7 April 2014

Conference call details: New GOC conference call numbers:

US: 1 866 953 9688
Outside US: UK 0808 238 6001
pin: 801561


Topics