Schizosaccharomyces pombe (Retired): Difference between revisions
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Here is my description of the pombe reference genome triage process. | |||
==== L - Total Publications ==== | ==== L - Total Publications ==== | ||
The total number of papers linked to an S. pombe gene using a PubMed search for all identifiers associated with that gene and/ or gene product fission yeast.i.e SPBC19G7.01c OR msh2 OR swi8 OR mut3 OR SPBC24C6.12c OR msh2p) AND (pombe OR fission yeast) | |||
==== M - Triaged papers ==== | ==== M - Triaged papers ==== | ||
The number of publications after filtering for | |||
i) wrong gene (i.e. name conflicts) | |||
ii) wrong organism | |||
iii) not relevant to GO | |||
==== N - Number of papers read ==== | ==== N - Number of papers read ==== | ||
This number sometimes increases the original number in columns L and M because curated papers sometimes lead to non listed papers (usually larger screens which do not specify gene names in the keywords). | |||
==== O - Number of papers producing GO annotations ==== | ==== O - Number of papers producing GO annotations ==== | ||
The final number which provided 1+ GO annotations with experimental evidence | |||
Revision as of 08:39, 5 February 2007
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Here is my description of the pombe reference genome triage process.
L - Total Publications
The total number of papers linked to an S. pombe gene using a PubMed search for all identifiers associated with that gene and/ or gene product fission yeast.i.e SPBC19G7.01c OR msh2 OR swi8 OR mut3 OR SPBC24C6.12c OR msh2p) AND (pombe OR fission yeast)
M - Triaged papers
The number of publications after filtering for i) wrong gene (i.e. name conflicts) ii) wrong organism iii) not relevant to GO
N - Number of papers read
This number sometimes increases the original number in columns L and M because curated papers sometimes lead to non listed papers (usually larger screens which do not specify gene names in the keywords).
O - Number of papers producing GO annotations
The final number which provided 1+ GO annotations with experimental evidence