Signaling ontology structure documentation: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 10: | Line 10: | ||
[i]signaling systems grouped by outcome of the signal | [i]signaling systems grouped by outcome of the signal | ||
---[i]signaling to control gene expression | ---[i]signaling to control gene expression | ||
[i]signaling systems grouped by location of the signal molecule | |||
---[i]cell surface receptor protein-mediated signaling | |||
[i]long distance signaling | [i]long distance signaling | ||
[i]short distance signaling | [i]short distance signaling | ||
| Line 17: | Line 20: | ||
---[i]phosphoylation/dephosphorylation-mediated signaling | ---[i]phosphoylation/dephosphorylation-mediated signaling | ||
---[i]GTP-binding protein-mediated signaling | ---[i]GTP-binding protein-mediated signaling | ||
==Sub-groups== | ==Sub-groups== | ||
| Line 25: | Line 30: | ||
[i]hydrophilic molecule-mediated signaling | [i]hydrophilic molecule-mediated signaling | ||
[i]signaling to control gene expression | [i]signaling to control gene expression | ||
| Line 40: | Line 46: | ||
---[i]local mediators (paracrine signaling) | ---[i]local mediators (paracrine signaling) | ||
//large and small | //large and small moleculaes are also going to be difficult. | ||
[i]large intracellular | [i]large intracellular mloecule-mediated signaling | ||
---[i]relay protein-mediated signaling | ---[i]relay protein-mediated signaling | ||
---[i]messenger protein-mediated signaling | ---[i]messenger protein-mediated signaling | ||
| Line 51: | Line 57: | ||
---[i]integrator protein-mediated signaling | ---[i]integrator protein-mediated signaling | ||
---[i]latent gene regulatory protein-mediated signaling | ---[i]latent gene regulatory protein-mediated signaling | ||
//These are a bit of a mouthful. | |||
[i]cell surface receptor protein-mediated signaling | |||
---[i]ion-channel linked cell surface receptor protein-mediated signaling | |||
---[i]G-Protein linked cell surface receptor protein-mediated signaling | |||
---[i]enzyme linked cell surface receptor protein-mediated signaling | |||
Revision as of 13:15, 26 March 2008
Top categories
[i]signaling systems grouped by chemical properties of the signal ---[i]hydrophobic molecule-mediated signaling ---[i]hydrophilic molecule-mediated signaling ---[i]intracellular signaling ------[i]large intracellular mloecule-mediated signaling ---[i]intercellular signaling
[i]signaling systems grouped by outcome of the signal ---[i]signaling to control gene expression [i]signaling systems grouped by location of the signal molecule ---[i]cell surface receptor protein-mediated signaling [i]long distance signaling [i]short distance signaling
[i]molecular switch-like signaling ---[i]phosphoylation/dephosphorylation-mediated signaling ---[i]GTP-binding protein-mediated signaling
Sub-groups
[i]hydrophobic molecule-mediated signaling ---[i]nitrous oxide-mediated signaling ---[i]carbon monoxide-mediated signaling
[i]hydrophilic molecule-mediated signaling
[i]signaling to control gene expression ---[i]primary response ---[i]secondary response
//distance is going to be problematic but this is how the book defines them. Also tricky between plants and animals.
[i]long distance signaling ---[i]long distance hormone-mediated signaling ---[i]long distance nervous system-mediated signaling
[i]short distance signaling ---[i]local mediators (paracrine signaling)
//large and small moleculaes are also going to be difficult.
[i]large intracellular mloecule-mediated signaling ---[i]relay protein-mediated signaling ---[i]messenger protein-mediated signaling ---[i]adaptor protein-mediated signaling ---[i]amplifier protein-mediated signaling ---[i]transducer protein-mediated signaling ---[i]bifurcation protein-mediated signaling ---[i]integrator protein-mediated signaling ---[i]latent gene regulatory protein-mediated signaling
//These are a bit of a mouthful.
[i]cell surface receptor protein-mediated signaling ---[i]ion-channel linked cell surface receptor protein-mediated signaling ---[i]G-Protein linked cell surface receptor protein-mediated signaling ---[i]enzyme linked cell surface receptor protein-mediated signaling