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  • *[[Taxon Main Page|Summary page for taxon data work]]
    367 bytes (61 words) - 09:29, 16 December 2008
  • ''Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology deve [[Taxon Trigger File Metrics]]
    1 KB (201 words) - 12:08, 29 September 2011
  • ...flow being used in creating or editing links between GO terms and the NCBI taxon slim. go/scratch/go-taxon/ncbitax-slim.obo
    7 KB (1,010 words) - 05:22, 1 June 2009
  • [[Category:Taxon]] What is the relationship between an annotation and the taxon id assigned to that annotation?
    5 KB (860 words) - 18:40, 15 July 2014
  • *Taxon restrictions are managed outside of the main ontology file, in tab-separate ...two TSVs: one storing 'only in taxon' assertions and one storing 'never in taxon' assertions. They both have the same structure (see below).
    7 KB (1,165 words) - 14:58, 22 June 2021
  • #REDIRECT [[Adding Taxon Restrictions]]
    39 bytes (4 words) - 21:13, 7 June 2018
  • ==Taxon in GO - 27th April 2007== ...senting a way in which GO could capture relationships between GO terms and taxon. We called this meeting to discuss whether this or a modified form should b
    10 KB (1,726 words) - 18:37, 14 June 2008
  • ...a list of the stages that we need to complete in the implementation of the taxon trigger file for the project to be considered complete. Where blockages hav [[Category:Taxon]]
    1 KB (206 words) - 09:42, 1 April 2009
  • #REDIRECT [[Taxon Constraint Check Engine]]
    43 bytes (5 words) - 18:34, 17 August 2010
  • [[Category:Taxon]] ...cificity so we also get all GO terms with cross products to these terms: [[Taxon-GO_Implementation_April_2008_onwards#Cross_Product_files]]
    495 bytes (75 words) - 18:49, 15 July 2014
  • [[Category:Ontology]] [[Category:Taxon]]
    400 bytes (57 words) - 12:32, 14 July 2014
  • [[Category:Taxon]] I am planning to move the taxon check files in cvs from
    1 KB (225 words) - 18:41, 15 July 2014
  • ...2008 Jennifer presented a proposal and pilot on the system of implementing taxon information. At the Salt Lake City Meeting it was decided to implement the In starting to implement the links I am using the custom taxon slim that Chris Mungall made from the NCBI taxonomy hierarchy.
    27 KB (4,179 words) - 08:54, 11 November 2008
  • Two entire taxa had gone missing from the taxon slim, and we had also lost a union_of term from the UnionTerms file. I do n Looked through the rest of Michelle's taxon spreadsheet and sent a few questions to her before doing the final edits:
    16 KB (2,543 words) - 09:19, 28 August 2009
  • [[Category:Taxon]] go/scratch/go-taxon/ncbitax-slim.obo
    1 KB (239 words) - 18:40, 15 July 2014
  • ...pt has produced. It is called gaf-taxon-gaffes.txt and is in go/scratch/go-taxon. TAXON RULE INCORRECT. (DEF OF GO TERM INCLUDES CYANOBACTERIUM) GO:0030089 "phyco
    28 KB (3,620 words) - 10:49, 4 September 2009
  • [[Category:Taxon]] ...to change the pipeline and so it would be best for FlyBase if part of the taxon checking script protocol would be to delete these lines before the files ar
    6 KB (854 words) - 18:37, 15 July 2014
  • [[Category:Taxon]] TAXON RULE INCORRECT? 1 HAMAP:MF_01631 - TAXON RULE INCORRECT? an E.coli annotation to GO:0000902 cell morphogenesis. Defi
    10 KB (1,156 words) - 18:37, 15 July 2014
  • [[Category:Taxon]]
    2 KB (363 words) - 18:37, 15 July 2014
  • [[Category:Taxon]] ...nore them, modify the SP keyword/interpro annotation stream or rewrite the taxon rule. I'd be interested in hearing other peoples' thoughts on this and to s
    3 KB (441 words) - 18:38, 15 July 2014

Page text matches

  • ''Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology deve [[Taxon Trigger File Metrics]]
    1 KB (201 words) - 12:08, 29 September 2011
  • [[Category:Taxon]] I am planning to move the taxon check files in cvs from
    1 KB (225 words) - 18:41, 15 July 2014
  • ==Improve Taxon constraints in PAINT== ...should take into account children and NOT just the node annotated to give taxon constraint warning
    730 bytes (106 words) - 08:59, 27 April 2020
  • ===Taxon constraint family review===
    250 bytes (35 words) - 12:54, 2 August 2021
  • ==Improve Taxon constraints in PAINT== ...should take into account children and NOT just the node annotated to give taxon constraint warning
    837 bytes (133 words) - 18:16, 2 March 2020
  • == Taxon Constraints == * Jim has written a plugin for Protege that will allow us to see inferred taxon constraints
    667 bytes (83 words) - 12:06, 10 August 2020
  • ===Inferred Taxon constraints=== (Pascale): Is there any way to view inferred taxon constraints somewhere? See question here: https://github.com/geneontology/g
    762 bytes (92 words) - 05:13, 26 November 2018
  • [[Category:Taxon]] GO:0001701 in utero embryonic development only_in Theria "taxon:32525"
    2 KB (218 words) - 18:36, 15 July 2014
  • ===Taxon Constraints and Obsoletions=== ...e removed from the import file and we need to run docker to regenerate the taxon constraint file.
    941 bytes (141 words) - 09:53, 1 July 2019
  • ==Update on Taxon constraints== * '''ACTION''': Dustin to check with Jim on where are the 'full' taxon constraints are, so that we use the same.
    1 KB (164 words) - 12:48, 7 July 2020
  • == Taxon Constraints == *Once edited, the taxon constraints will need to be added by regenerating the imported file.
    1 KB (200 words) - 13:09, 22 October 2018
  • [[Category:Taxon]] go/scratch/go-taxon/ncbitax-slim.obo
    1 KB (239 words) - 18:40, 15 July 2014
  • #REDIRECT [[Adding Taxon Restrictions]]
    39 bytes (4 words) - 21:13, 7 June 2018
  • ==Implementing the taxon checks==
    812 bytes (124 words) - 12:33, 27 April 2020
  • #REDIRECT [[Taxon-GO Proposal 2007]]
    36 bytes (3 words) - 18:36, 14 June 2008
  • #REDIRECT [[Taxon Constraint Check Engine]]
    43 bytes (5 words) - 18:34, 17 August 2010
  • ==Taxon constraints==
    946 bytes (137 words) - 13:02, 4 August 2021
  • *[[Taxon Main Page|Summary page for taxon data work]]
    367 bytes (61 words) - 09:29, 16 December 2008
  • #REDIRECT [[Taxon-GO Implementation April 2008 onwards]]
    56 bytes (5 words) - 04:50, 30 April 2008
  • #REDIRECT [[Taxon-GO Checks and Commentary - Part 1]]
    53 bytes (7 words) - 09:37, 2 September 2009

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