Suggestions for RefGen jamboree annotation targets (Archived)
Please note here any genes that you think might be suitable for a Reference Genome jamboree.
All groups that participate in the jamboree should note the amount of literature that is available for each proposed target. Therefore the aim would be to select two targets for a jamboree that have the widest spread of literature across all participating groups.
In addition, please indicate your preferred date for the RefGen call, by visiting: http://www.doodle.com/a4h2u7hdcmqieiir
Target Gene Name | PPOD URL | Arabidopsis ID & papers | Dicty ID & papers | Drosophila ID & papers | C.elegans ID & papers | Chicken ID & papers | E.coli ID & papers | Human ID & papers | Mouse ID & papers | Rat ID & papers | S.cerevisiae ID & papers | S.pombe ID & papers | Zebrafish ID & papers | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WNT4 (Ligand for frizzled family of transmembrane receptors. Probable developmental protein. Possible signaling molecule which affects the development of discrete regions of tissues) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL5001 | none | none | none | WB:WBGene00000857 (cwn-1 · K10B4.6) · UniProtKB:P34888
~17 papers |
(UniProtKB:P49337)~10 | (UniProtKB:P56705)~70 | (MGI:98957) ~65 | (RGD:621348) ~40 | (no ortholog) 0 | ZDB-GENE-980526-352 wnt4a Q1RLW9 ~16; ZDB-GENE-000411-1 wnt4b Q9IAU3 ~2 | |||
SLIT2 (molecular guidance cue in cellular migration) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL916 | none | none | (UniProtKB:P24014, FB:FBgn0003425) ~100 | WB:WBGene00004854 (F40E10.4 · slt-1) · UniProtKB:Q20204
~27 papers |
(UniProtKB:Q90WZ2,
UniProtKB:Q90XG2, UniProtKB:Q90Z44) ~10 papers |
(UniProtKB:O94813) ~60 | (MGI:1315205) ~35 | (RGD:69310) ~40 | (no ortholog) 0 | UniProtKB:Q3S2J2 · ZFIN:ZDB-GENE-030722-3 (slit1a) ~11, UniProtKB:Q3Y6S4 · ZFIN:ZDB-GENE-030722-4 (slit1b) ~8, UniProtKB:Q9DE36 · ZFIN:ZDB-GENE-010306-3 (slit2) ~12, UniProtKB:Q9DE37 · ZFIN:ZDB-GENE-010306-4 (slit3) ~11 | |||
NFX1 (Nuclear transcription factor). In mammals may be involved in regulating duration of an inflammatory response) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL3955 | (TAIR:AT1G10170)(UniProtKB:Q9SY59) ~8 | DDB_G0293590 : 1 HTP | (UniProtKB:P40798, FB:FBgn0001978) ~3 | WB:WBGene00007048 (C16A3.7 · tag-182) · UniProtKB:Q18034
0 papers |
(GenBank:XP_418890)
No papers |
(UniProtKB:Q12986) ~8 | (MGI:1921414) ~ 2 | (RGD:1310277) - 0 | (SGD:S000004968) 7 | No ortholog in set | |||
ATF6B (Cyclic AMP-dependent transcription factor ATF-6 beta) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL4962 | none | none | (UniProtKB:Q8SX87, FB:FBgn0033010) 0 | WB:WBGene00000222 (F45E6.2 · atf-6) · UniProtKB:Q20435 (F45E6.2 · atf-6)
~9 papers |
No ortholog | (UniProtKB:Q99941) ~40 | (MGI:105121) ~ 3 | (RGD:1303317) - 0 | (no ortholog) 0 | Q5RH85 si:ch211-199m3.9 ZDB-GENE-041014-328 ~0 | |||
SIR2 (NAD-dependent histone deacetylase SIR2 of the Sirtuin family involved in regulation of lifespan, EC=3.5.1.-) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/Para1362 | (TAIR:AT5G55760) (UniProtKB:Q9FE17) ~2 | (UniProtKB:Q54GV7): DDB_G0289967 (sir2D): none | (UniProtKB:Q9VK34, FB:FBgn0024291) ~11 | WB:WBGene00004800 (R11A8.4 · sir-2.1) · UniProtKB:Q21921 (R11A8.4 · SIRT1_CAEEL · sir-2.1)
~40 papers |
(UniProtKB:Q68BG0)1 paper | (UniProtKB:P75960) | (UniProtKB:Q96EB6) ~115 | (MGI:2135607) ~ 49 | (RGD:1308542) ~36 | (SGD:S000005429; SGD:S000005936; SGD:S000005551; SGD:S000002599; SGD:S000002200) ~640 [even if we chose to do JUST SIR2 and not the related 4 proteins, that would still be 592 papers] | (UniProtKB:O94640) ~1 | UniProtKB:Q7ZVK3 · ZFIN:ZDB-GENE-030131-1028 (sirt2) ~0, UniProtKB:A1L2B7 · ZFIN:ZDB-GENE-070112-1762 (sirt3) ~0, UniProtKB:Q1LWD1 ZDB-GENE-061207-46 (si:dkey-103i16.6) ~0, ZFIN:ZDB-GENE-041010-65 (zgc:103539) UniProtKB:Q5XJ86 ~0, UniProtKB:Q6DHI5 · ZFIN:ZDB-GENE-040718-349 (sirt5) ~0, UniProtKB:Q6IQK0 · ZFIN:ZDB-GENE-031007-2 (sirt6) ~0, | |
ELAC2 (tRNA 3'-processing endonuclease; defects are involved in prostate cancer) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL1557 | WB:WBGene00001983 (hoe-1 · E04A4.4) · UniProtKB:O44476
1 paper |
(UniProtKB:Q9BQ52) ~6 | (SGD:S000001787) ~13 | ZFIN:ZDB-GENE-041111-227 (im:7145112) · UniProtKB:Q6DG69 ~0 | |||||||||
SURF1 (involved in assembly of cytochrome c oxidase; defects are a cause of Leigh syndrome) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL1594 | WB:WBGene00004787 · UniProtKB:Q9N5N8
0 papers |
(UniProtKB:Q15526) ~30 | (SGD:S000003344) ~41 | ||||||||||
NIPBL (involved in sister chromatid cohesion; defects are the cause of Cornelia de Lange syndrome type 1 (CDLS1)) | http://ppod.princeton.edu/cgi-bin/ppod.cgi/GO3/OrthoMCL1223 | WB:WBGene00004166 (Y43H11AL.3 · pqn-85) · UniProtKB:Q95XZ5
2 papers |
(UniProtKB:Q6KC79)~19 | (SGD:S000002588) ~ 45 | ||||||||||