Taxon-GO Checks and Commentary - Part 7: Difference between revisions

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===Comments from WormBase, Ranjana Kishore and Kimberly Van Auken===
==Comments from WormBase, Ranjana Kishore and Kimberly Van Auken==


===Taxon inconsistent terms coming from electronic annotation through the InterPro2GO pipeline===
==Taxon inconsistent terms coming from electronic annotation through the InterPro2GO pipeline==
<pre>
<pre>
GO:0042601 endospore-forming forespore  
GO:0042601 endospore-forming forespore  
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For the above terms, should we communicate with InterPro2GO curators, that these mappings do not work for all species, or do we have to block these on our end?
For the above terms, should we communicate with InterPro2GO curators, that these mappings do not work for all species, or do we have to block these on our end?


===Taxon inconsistent terms used in our annotation===
==Taxon inconsistent terms used in our annotation==
<pre>
<pre>
GO:0001703 gastrulation with mouth forming first
GO:0001703 gastrulation with mouth forming first

Revision as of 15:52, 13 January 2010

Comments from WormBase, Ranjana Kishore and Kimberly Van Auken

Taxon inconsistent terms coming from electronic annotation through the InterPro2GO pipeline

GO:0042601 endospore-forming forespore 
GO:0009772 photosynthetic electron transport in photosystem II 
GO:0019684 photosynthesis, light reaction 					
GO:0030077 plasma membrane light-harvesting complex 		
GO:0015979 photosynthesis 		
GO:0015995 chlorophyll biosynthetic process
GO:0008316 structural constituent of vitelline membrane 		
GO:0015979 photosynthesis 		
GO:0016032 viral reproduction

For the above terms, should we communicate with InterPro2GO curators, that these mappings do not work for all species, or do we have to block these on our end?

Taxon inconsistent terms used in our annotation

GO:0001703 gastrulation with mouth forming first	

It is generally agreed that C. elegans belongs to the Protostomia, so annotations to this term should remain. Kimberly feels that the term itself might need some work.

GO:0001542 ovulation from ovarian follicle

We agree that the assignment of this term is inappropriate in elegas and it has been now removed in our manual annotation database. It has been replaced with the higher level term 'ovulation'. This change will be reflected in our next upload to the GO consortium.