Taxon-GO Checks and Commentary - Part 9: Difference between revisions
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<pre> | <pre> | ||
Could I check with you what version of gene association files you are using in your GO database to query the GO taxon checks that Jen has generated? I'm very confused by one of the results from the most recent run - | Could I check with you what version of gene association | ||
files you are using in your GO database to query the GO | |||
taxon checks that Jen has generated? I'm very confused | |||
by one of the results from the most recent run - | |||
protein NCBITaxon:9606 20030904 PINC GO:0005816 "spindle pole body" only_in NCBITaxon:4751 "Fungi" :: UniProtKB P23258 TUBG1 GO:0005816 PMID:1904010 | protein NCBITaxon:9606 20030904 PINC | ||
GO:0005816 "spindle pole body" only_in NCBITaxon:4751 "Fungi" | |||
:: UniProtKB P23258 TUBG1 GO:0005816 PMID:1904010 | |||
TAS C protein NCBITaxon:9606 20030904 PINC | |||
This annotation has not been in our gene association file since the GOA 06/10/2009 human gene association file release. | This annotation has not been in our gene association file | ||
since the GOA 06/10/2009 human gene association file release. | |||
It would be ideal if the taxon-checking scripts could be run over the most recent file releases, so that we can see the improvements we're making in our annotation sets, and which annotations we still need to fix. | It would be ideal if the taxon-checking scripts could be run | ||
over the most recent file releases, so that we can see the | |||
improvements we're making in our annotation sets, and which | |||
annotations we still need to fix. | |||
</pre> | </pre> | ||
Revision as of 10:37, 27 January 2010
Emily Dimmer of GOA has sent this enquiry to Chris:
Could I check with you what version of gene association files you are using in your GO database to query the GO taxon checks that Jen has generated? I'm very confused by one of the results from the most recent run - protein NCBITaxon:9606 20030904 PINC GO:0005816 "spindle pole body" only_in NCBITaxon:4751 "Fungi" :: UniProtKB P23258 TUBG1 GO:0005816 PMID:1904010 TAS C protein NCBITaxon:9606 20030904 PINC This annotation has not been in our gene association file since the GOA 06/10/2009 human gene association file release. It would be ideal if the taxon-checking scripts could be run over the most recent file releases, so that we can see the improvements we're making in our annotation sets, and which annotations we still need to fix.