Transcription jamboree: Difference between revisions
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(Created page with "Examples for discussion at electronic Transcription Jamboree 1. How much evidence is needed to make MF annotations: i) PMID: 11486045 - Fig 2 I would like to annotate to the obs...") |
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Examples for discussion at electronic Transcription Jamboree | Examples for discussion at electronic Transcription Jamboree | ||
=How much evidence is needed to make MF annotations = | |||
i) PMID: 11486045 - Fig 2 | i) PMID: 11486045 - Fig 2 | ||
I would like to annotate to the obsolete term GO:0016564 transcription repressor activity | I would like to annotate to the obsolete term GO:0016564 transcription repressor activity. How should this be annotated to the MF ontology with the new terms? | ||
How should this be annotated to the MF ontology with the new terms? | |||
We have | ii) We have | ||
GO:0001102 RNA polymerase II activating transcription factor binding | GO:0001102 RNA polymerase II activating transcription factor binding | ||
and | and | ||
GO:0001103 RNA polymerase II repressing transcription factor binding | GO:0001103 RNA polymerase II repressing transcription factor binding | ||
Should we | Should we also have | ||
RNA polymerase II activating/repressing transcription factor ACTIVITY? | RNA polymerase II activating/repressing transcription factor ACTIVITY? | ||
=Annotation to promoter terms = | |||
Revision as of 05:43, 22 June 2011
Examples for discussion at electronic Transcription Jamboree
How much evidence is needed to make MF annotations
i) PMID: 11486045 - Fig 2 I would like to annotate to the obsolete term GO:0016564 transcription repressor activity. How should this be annotated to the MF ontology with the new terms?
ii) We have GO:0001102 RNA polymerase II activating transcription factor binding and GO:0001103 RNA polymerase II repressing transcription factor binding Should we also have RNA polymerase II activating/repressing transcription factor ACTIVITY?