WPWG-20100427-transcript

• sjcarbon: test
• cjm: just us?
• pasc: Rama said she can't make it
• pasc: not sure where Ben is - he said if he was notified he'd come ...
• sjcarbon: cjm-maybe so.
• - gwg has joined the room
• sjcarbon: ben said he might not be able to make it in an email.
• cjm: i have to leave early too, let's try and zip through the items
• sjcarbon: well, for the people who are here...
• sjcarbon: i'll send a link later today with a variation of the term details display.
• cjm: "Finish new term details page--find way to avoid confusion with old view " -- I think the best way to avoid confusion is to show this as a simple sentence-oriented table
• sjcarbon: a couple of different icons and doug's connection idea.
• sjcarbon: ah.
• sjcarbon: then perhaps i won't be sending a link today.
• cjm: doug's idea was to implement the qgo anc table?
• sjcarbon: no.
• sjcarbon: he wanted connecting lines for inferred releations
• sjcarbon: (popup connecting lines).
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• - 08:41 -
• cjm: is there a mockup or more details?
• hitz: hi guys sorry
• sjcarbon: no problem.
• sjcarbon: chris - i was going to send a mostly functional link later today.
• sjcarbon: but if we are going to switch it fundamentally, i don't want to have it out to sow confusion and unrest.
• sjcarbon: my impression was that we were going to rework what i showed rather than redo; but i was pretty out of it at the meeting.
• sjcarbon: if you're on campus today, we can go over what you have in mind. it sound like it would be generally simpler, so the turnaround should be pretty fast.
• cjm: well why dont you send the functional link later today and we can discuss it on the wpwg list
• cjm: ok
• sjcarbon: okay.
• sjcarbon: other frontend and bugs...
• sjcarbon: ecoli consistency.
• cjm: what does that mean?
• sjcarbon: there are currently a couple of hacks in amigo around ecoli.
• sjcarbon: for example.
• - 08:46 -
• sjcarbon: :
• sjcarbon: fixing it in the code to make sure a certain strain appears in the top 50 list of species for the filters.
• hitz_: there are two species/strains as source, right
• sjcarbon: things like that.
• sjcarbon: if nobody knows certainly here, i can check real fast.
• cjm: ok, the strain vs species issue. Jim has to resolve this. what was the status of this after the stanford meeting? is he going with species, strains or both? or was it not resolved?
• hitz_: not resolved
• sjcarbon: (lots more than 2 in the db)
• sjcarbon: i'll contact jim. what is the most desirable outcome?
• sjcarbon: i assume fixing upstream?
• cjm: one or the other but not oth
• cjm: not both
• sjcarbon: so just one in the end, right?
• cjm: species preferable to strain as that's consistent
• - 08:51 -
• cjm: actually most desirable is for it to be the same qfo - ftp://ftp.ebi.ac.uk/pub/contrib/qfo/ - 83333
• sjcarbon: and amigo would just work at the species level?
• cjm: (83333 is the strain)
• sjcarbon: the "generic" strain that amigo will use?
• cjm: yes
• sjcarbon: gotcha.
• cjm: (from AmiGO's POV I don't think it matters if it's a strain or species, it's still a leaf node on the ncbi taxonomy tree)
• sjcarbon: (true (not that amigo is doing much with the tree yet)).
• sjcarbon: if we do the backend stuff on thursday, i think that is all on the agenda for this group of people.
• - 08:56 -
• sjcarbon: anybody with anything else?
• gwg: nope!
• sjcarbon: cool--with that everybody who needed to escape by 9am can run!
• - gwg has disconnected (Quit: Leaving.)
• hitz_: bye
• - hitz_ has disconnected (Quit: Leaving)
• - hitz has disconnected (Quit: Leaving)
• sjcarbon: bye!