ZFIN, September 2009

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ZFIN, The Zebrafish Information Resource, September 2009 / WORKING VERSION, NOT FINAL VERSION;

1. Staff working on GOC tasks

Name FTE
Doug Howe 0.6 Leyla Bayraktaroglu 0.05 Yvonne Bradford 0.05 David Fashena 0.05 Ken Frazer 0.05 Melissa Haendel 0.05 Sridhar Ramachandran 0.05 Barbara Ruef 0.05 Amy Singer 0.05 Ceri Van Slyke 0.05

The total number of FTE working on GOC tasks is 1.0.

0 FTE funding is provided from the GOC NIHGRI grant.

2. Annotation progress

Table 1: Number of Annotations to Various GO Aspects

Annotations BP () BP (9/1/09) change MF () MF (9/1/09) change CC () CC (9/1/09) change
non-IEA/non-ND 6368 + 1177 + 680 +
IEA 21149 + 41086 + 16961
ND 4611 + 4109 5577 +

Table 2: Number of Genes Annotated to Various GO Aspects

Genes BP () BP (9/1/09) change MF () MF (9/1/09) change CC () CC (9/1/09) change
non-IEA/non-ND 1755 + 693 + 439 +
IEA 7368 + 9628 + 6840
ND 4611 + 4109 5577 +

3. Methods and strategies for annotation

a. Literature curation: We continue to focus our GO curation effort on annotation of gene products from the current literature as well as any older literature associated with genes targeted as part of the Reference Genomes project.

b. Computational annotation strategies: Each month we update our UniProt data. At that time, we also apply the current ec2go, interpro2go and ec2go translations to produce IEA annotations. These are dumped and reloaded from scratch at each new UniProt load into ZFIN.

c. Priorities for annotation:

(1) Current literature describing new genes or alleles

(2) All literature associated with genes targeted in the Ref. Genomes project


4. Presentations and publications

None

5. Other Highlights

A. Ontology Development Contributions --to be filled in--

B. Talks

None

C. Other highlights

None