ZFIN Progress Report for October 2008: Difference between revisions

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=  Staff: =
=  Staff: =
#Doug Howe (0.5 FTE ; lead GO curator)
#Doug Howe (0.7 FTE ; lead GO curator)
#Ceri VanSlyke (0.1 FTE)
#Ceri VanSlyke (0.1 FTE)
#Dave Fashena (0.1 FTE)
#Dave Fashena (0.1 FTE)

Revision as of 19:52, 7 November 2008

Staff:

  1. Doug Howe (0.7 FTE ; lead GO curator)
  2. Ceri VanSlyke (0.1 FTE)
  3. Dave Fashena (0.1 FTE)
  4. Leyla Bayraktaroglu (0.1 FTE)
  5. Melissa Haendel (0.1 FTE)
  6. Barbara Reuf (0.1 FTE)
  7. Amy Singer (0.1 FTE)
  8. Yvonne Bradford (0.1 FTE)

Annotation Progress

ZFIN GO STATS as of Oct. 2, 2008


Annotation Type 2_Oct_08 4_Oct_07 Change % Change
Total Genes with Annotation(at least 1 GO term of any kind):
14522
13584
938
6.9%
Number of Genes with Manual Annotation (non-IEA, non-ND)
1777
1433
344
24%
"Number of Genes with Electronic (IEA) Annotation"
SwissProt KW to GO
6656
5304
1352
25.5%
Interpro to GO
9981
9001
980
10.9%
EC to GO
388
326
62
19%

Methods and strategies for annotation

Literature curation:

Literature curation of the current literature remains our primary focus as a whole. Doug spends the majority of his GO curation time on the Reference Genome Project genes. As such, much of that time is spent on curating GO from older literature. The remainder of the ZFIN curators are focused on keeping up to date with current literature.

Priorities for annotation

  1. Genes assigned by Reference Genome Project (Doug)
  2. Keep up to date with literature curation
  3. We do not currently use any other priority schemes for targeting genes for GO curation.

Computational annotation strategies:

Application of interpro2go, ec2go, spkw2go translations occurs during our monthly load of data from UniProt. The application of these translation tables is computational and requires little manual curation.